Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02610 ATGCAAATTCCATTTAACAACCCATCATCACTCATTATATTCATCCTTATCCTCTTTTTCTCTCATGGTACAAACGCTTTTGGCACCATGGGACCAATCTCAGCTTCATTTGGAGAATACGAATTGTTTTGCTCTATCGATGCAAGTGGTAAACAAGATGTTATTTGTTGGGGCAAAAATACTACTTCACCGCAACCTCTTTCTTCTTCCTCTTATGTTTCCAACATTCCTGCCATGTCAGCACTTTCTGGCGGTGAAGGTTTTCTTTGCGGCATTTTAGCAAACACTTCGCAGGCGTTTTGTTGGGCTGCTACTTCTAAACAAAATTCAGATCCCGTTTTGGTTCCACCGTCGTACCGGACCACCGCTTACTCCCACATCGCTGCCGGTAAGAATCATGTCTGCGCTGTTAGAGGATCTTACTACTCCGATCGTGATTCCGGAACTGTAGATTGTTGGCAAATCACGAAAAGAACTAAGAATGGTACTTTAATGGCGGTGCTCAATGATTCGTTTTCTGATCAATCGATTACTAATCTTGAAATGAATCGGGTTGTTTCCGGTGAAGGGTTTACTTGTGGTGGGGTTAGAGATGGAGGGTTGGTTTGTTGGGGACCCAATTCGGAAAATCTGAAAGTTTCCAATGTTTCGGATAGTTTTGCTGTTTTGGTGGCGGGGAGAACCGCCGTTTGCGGTGTTTCGAATATCTCCGGCGACGTGAGATGTTGGGGAGATATAGAATTTCCGTTAAAGGAGATTCGTTTTGTTTCACTCTCGGGCGGGGCACGCCATTTCTGCGGCATTCGAGAGGATAATCATGTGGTTGAATGTTGGGGTGATTTGAATTCATCTTTGGTTCCTAAAGGTAATGGCTTTATGGCAATTGCTTCTTCTGATTATACAACTTGTGGTATAAGAGAAGATGATCTTCTTCTAGATTGTTGGTTGGTCAACGCTTCAAAGCCTGATTTTGACCCTCCTTTGGAGCTTTCAAGTCCTGGTCTTTGTAGGTCAAGTTCTTGTGAAGTTAATGAGTTTGTTTTCAATGTTAGTGTTCTTAATGAACCAGATTTAACAAGTTTATGTGTTAGACAAGATTTGAGGATTTGTTCACCTTGTGGTTATAATTGTTCACAAGGTTCCTTTTTGTCTAGTCCTTGTACTCAAAATTCTGATAGAGTTTGCACAGCTTGTTCTCTTTGTCAGAACAGTTCTTGTCTGAGTGTTTGTAAACTTCATTCTTCAAATGGGTTTTTACATTGGCATCATCTTCGTAGATGGGTTGTCATAATCGGATCTTCTGTTTTGTGTTTGTTGCTGATTTTGACTTGTGGGTGTCTTTTTCGATGTTTGGTTGGTTCAAGGGGACAACATAGGACAAAGAAACAATCCAAGTCTTGTATCGGTAAACATGAACAAGATGATGATGATGTGAATGGAAATGGTAATGGTAATGGTCTTCTTCATTCGTCTTCTTCGGCTGCGTCTTGTCCTGGATTGCCTCAGGTTTTCAGGCTTTCGGAATTGAAAGACGCTACCAATGGTTTCAAGGAGTTTAATGAGCTTGGGAGGGGAAGTTATGGATTTGTTTACAAAGCTACTTTGGCGGATGGGAGAGTGGTTGCCGTGAAAAGAGCGAATGCTGCCACGATAATACACACCAACAATCGTGACTTCGAAATGGAGTTGGAAATTTTGTGCAAAATTCGACATGTTAATATTGTTAACTTGTTGGGTTATTGTGCCGAGATGGGTGAGAGGTTGCTTGTTTATGAGTATATGTCTCATGGGACACTTTCTGATCACATTCATGGTGGTCTTTCTCCTCTTAATTGGAGTTTAAGGCTTAAGATAGCTATGCAATCTGCAAAGGGTATAGAGTACCTTCACAAAGAACTGTTGCCTCCAATTGTTCATAAGGATCTCAAGAGTTCCAATATTCTTTTGGATTCAGAATGGGGGGCCAGAGTTTCCGACTTTGGACTTCTTACTTTGAGTGATAAAGATCTTAAAGGCGACATGGAAAGTGATGTTTACAGCTTCGGGATTGTATTGTTGGAAATTCTAAGTGGAAGGAAGGCTTTTGATAGAGATTTTGATCCACCTAATGTTGTTGAGTGGGCAGTGCCTTTGATCAAACAAGGTAAGGCAGCTGCCGTAATCGATCGCTACGTCGCTCTTCCGAGAAATGTCGAGCCTTTGCTTAAACTCGGCGATATAGCAGAGCTTTCTGTAAGAGATAATCCGACTGAGCGTCCATCTATGTCGGATATAGCATCTTGGTTGGAGCAAATTGTGAAGGATGGATTGATCTTGTAA 2319 0.4166 MQIPFNNPSSLIIFILILFFSHGTNAFGTMGPISASFGEYELFCSIDASGKQDVICWGKNTTSPQPLSSSSYVSNIPAMSALSGGEGFLCGILANTSQAFCWAATSKQNSDPVLVPPSYRTTAYSHIAAGKNHVCAVRGSYYSDRDSGTVDCWQITKRTKNGTLMAVLNDSFSDQSITNLEMNRVVSGEGFTCGGVRDGGLVCWGPNSENLKVSNVSDSFAVLVAGRTAVCGVSNISGDVRCWGDIEFPLKEIRFVSLSGGARHFCGIREDNHVVECWGDLNSSLVPKGNGFMAIASSDYTTCGIREDDLLLDCWLVNASKPDFDPPLELSSPGLCRSSSCEVNEFVFNVSVLNEPDLTSLCVRQDLRICSPCGYNCSQGSFLSSPCTQNSDRVCTACSLCQNSSCLSVCKLHSSNGFLHWHHLRRWVVIIGSSVLCLLLILTCGCLFRCLVGSRGQHRTKKQSKSCIGKHEQDDDDVNGNGNGNGLLHSSSSAASCPGLPQVFRLSELKDATNGFKEFNELGRGSYGFVYKATLADGRVVAVKRANAATIIHTNNRDFEMELEILCKIRHVNIVNLLGYCAEMGERLLVYEYMSHGTLSDHIHGGLSPLNWSLRLKIAMQSAKGIEYLHKELLPPIVHKDLKSSNILLDSEWGARVSDFGLLTLSDKDLKGDMESDVYSFGIVLLEILSGRKAFDRDFDPPNVVEWAVPLIKQGKAAAVIDRYVALPRNVEPLLKLGDIAELSVRDNPTERPSMSDIASWLEQIVKDGLIL 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02610 772 SUPERFAMILY Protein kinase-like (PK-like) 493 763 IPR011009 -
Trre1g02610 772 ProSitePatterns Protein kinases ATP-binding region signature. 522 544 IPR017441 GO:0005524
Trre1g02610 772 Gene3D - 78 325 IPR009091 -
Trre1g02610 772 SMART serkin_6 516 762 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g02610 772 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN ACR4 10 766 - -
Trre1g02610 772 FunFam Serine/threonine-protein kinase-like protein CCR1 671 769 - -
Trre1g02610 772 SUPERFAMILY RCC1/BLIP-II 33 282 IPR009091 -
Trre1g02610 772 ProSitePatterns Serine/Threonine protein kinases active-site signature. 637 649 IPR008271 GO:0004672|GO:0006468
Trre1g02610 772 Pfam Protein tyrosine and serine/threonine kinase 520 666 IPR001245 GO:0004672|GO:0006468
Trre1g02610 772 ProSiteProfiles TNFR/NGFR family cysteine-rich region domain profile. 340 395 IPR001368 GO:0005515
Trre1g02610 772 Gene3D Transferase(Phosphotransferase) domain 1 594 671 - -
Trre1g02610 772 Gene3D Transferase(Phosphotransferase) domain 1 672 769 - -
Trre1g02610 772 Gene3D Phosphorylase Kinase; domain 1 489 593 - -
Trre1g02610 772 ProSiteProfiles Protein kinase domain profile. 516 762 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g02610 772 FunFam serine/threonine-protein kinase-like protein CCR1 486 593 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02610 Trre-Chr1 21373718 21376036 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02610 92 763 Receptor kinase-like Gene Family AT5G47850 28.880 5.29e-70 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Trre1g02610 PK_Tyr_Ser-Thr 1.1e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02610 - - gmx:100802259 1174.84