Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02603 ATGAATACATTTATGGATTCAAGGGAAAATAATAATAATAATAATAATACTAATAATAATAAGTCATCAGAAGAAGTTGAAAGGTGTTTAGATCCTCAGCTATGGCATGCTTGTGCAGGTGGAATGGTTCAGATGCCAACAGTGAACAGTAAAGTTTATTACTTTCCTCAAGGTCATGCTGAACATGCATGTGGACCTGTTAACTTCATGAATTGTCCAAAAGTTTCACCTTTGATTCCATGCAAAGTTGTTTCTATTAAGTACATGGCTGATCCTGAAACAGATGAGGTTTATGCTAAGATTAAGCTTGTTCCTTTGAGTGGAAATGGAAATGGAAATGGAAATGATGGGACTCAAGATTGTTATGGCAATGATGTTGTTGTTGAAAATCAAGACAAGCCTGTTTCATTTGCAAAGACATTGACTCAATCGGATGCTAACAATGGTGGAGGTTTTTCTGTTCCTAGGTATTGTGCCGAGACGATTTTCCCTCGTTTGGATTACGCGGCTGATCCTCCTCTTCAGAACATTTTGGCTAAAGATGTTCATGGCGAGACGTGGAAGTTTAGGCATATTTATAGGGGGACGCCGAGGCGGCATCTTTTGACTACTGGTTGGAGTACTTTTGTTAATCACAAGAAGCTTATTGCCGGGGATTCAATTGTGTTTTTGAGGGCGGAAAACGGTGATCTTTGTGTTGGGATTCGTCGAGCAAAAAAGGGTATCGGTGGTGGACATGAGGACCCTTCAGGGTGGAATCCTGTTGGAGAAAATTTTCCACTTCCTTGGTTTACACAGAATGAGAATCAAATGATGAGAAACATTAACGACAACAACAGAAACGGTTTGAACTCGAGCGCAAATATAACTGGGAGGGCTAAAGTTAGGCCAGAAGCGGTCCTCGAAGCAGTAACTCTAGCTGCGAATAAACAACCATTCGAGGTTGTTTACTACCCTCGCGCAAGTACACCTGAGTTTTGTGTGAAGGCGCCTTTAGTAGAGGCGGCAATGCAGATTCGATGGTGTTCTGGAATAAGATTCAAGATGGCCTTCGAAACCGAGGACTCATCTCGAATTAGTTGGTTTATGGGAATTGTTTCTGGAGTTCAGTTTGTTGATCCCCTTCTTTGGCCTAACTCACCTTGGAGGCTTCTCCAGGTTAAATGGGATGAACCAGATTTACTGCAAAATGTGAGAAGGGTAAGTCCATGGTTAGTTGAATTGGTAGCAAACATTCCTTCCATAAACCTTTCCCCATTCTCACAACCAAGGAAGAAATTGAGATTGTCGCCGCACCAAGATTTCCCCTTTGACAGCCCAATTCCGGTGCCGACATTTCCAAATAACCTTCTAGGTCCGAGCAACTTATTCCGTTGTCTACCCGAAAATACTCCTGCTGGCATGCAGGGAGCCAGGCATGCTCATTATGGTCTTCCAATATCGGATCACCACCTCAGTAAAGTTCAGTCAGGTCTATTTTCAGCCGGTTGCGTGCCTTTTGATCATGCTGCTAAACTATCTACTGTCTCTAATAACCTAATGATGCAAAAATCTAGCATGAGTGAGAATGTGTCTTGCTTATTATCTATGGCAAGTTCTACTCAGTCTTCGAAGAAATTCGATGATGAGAAAAAACCTCAGCTTGTTCTTTTCGGCCAAAAAATTCTCACTGAGCAACAGATCTCTGGCGATCGTTCATCAGATGGAAATGCCGATAAAACGAGCAACTTTTCCAATGGTTCAGGAACTCCACTTCATCAACAAGGCTTACAAAAACACCCCTCTTGTGACAGTTTCCCGAGGTGTAAGGATAACAACCAAGAAACTGAGACGAGTTTGGAGAGTACTGATCACTGCAAAGTTTTTCTCGAATCAGAAGATGTTGGTCGGACAATTGACCTCTCTTTACTCGAGTCTTACGATGAACTGTACAGAAAGCTGGCAGAGATGTTTGACATAGATAAATATGAGAAGGTAAGTCGCGTGCTCTATCGTGATATATCAGGTGCAGTCAAACACATTGGAGATGAACCATTCAGTAAATTTACAAGAACAGCAAGGAGGTTGACAATTCTAATGGATTCAAGAAAATAA 2094 0.4183 MNTFMDSRENNNNNNNTNNNKSSEEVERCLDPQLWHACAGGMVQMPTVNSKVYYFPQGHAEHACGPVNFMNCPKVSPLIPCKVVSIKYMADPETDEVYAKIKLVPLSGNGNGNGNDGTQDCYGNDVVVENQDKPVSFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYAADPPLQNILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLIAGDSIVFLRAENGDLCVGIRRAKKGIGGGHEDPSGWNPVGENFPLPWFTQNENQMMRNINDNNRNGLNSSANITGRAKVRPEAVLEAVTLAANKQPFEVVYYPRASTPEFCVKAPLVEAAMQIRWCSGIRFKMAFETEDSSRISWFMGIVSGVQFVDPLLWPNSPWRLLQVKWDEPDLLQNVRRVSPWLVELVANIPSINLSPFSQPRKKLRLSPHQDFPFDSPIPVPTFPNNLLGPSNLFRCLPENTPAGMQGARHAHYGLPISDHHLSKVQSGLFSAGCVPFDHAAKLSTVSNNLMMQKSSMSENVSCLLSMASSTQSSKKFDDEKKPQLVLFGQKILTEQQISGDRSSDGNADKTSNFSNGSGTPLHQQGLQKHPSCDSFPRCKDNNQETETSLESTDHCKVFLESEDVGRTIDLSLLESYDELYRKLAEMFDIDKYEKVSRVLYRDISGAVKHIGDEPFSKFTRTARRLTILMDSRK 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02603 697 Gene3D - 340 414 - -
Trre1g02603 697 Gene3D - 135 239 IPR015300 -
Trre1g02603 697 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 28 693 IPR044835 GO:0003677|GO:0006355|GO:0009725
Trre1g02603 697 FunFam Auxin response factor 341 414 - -
Trre1g02603 697 MobiDBLite consensus disorder prediction 561 596 - -
Trre1g02603 697 CDD B3_DNA 136 237 IPR003340 GO:0003677
Trre1g02603 697 Gene3D - 612 697 - -
Trre1g02603 697 MobiDBLite consensus disorder prediction 561 597 - -
Trre1g02603 697 ProSiteProfiles B3 DNA-binding domain profile. 137 239 IPR003340 GO:0003677
Trre1g02603 697 MobiDBLite consensus disorder prediction 1 23 - -
Trre1g02603 697 SUPERFAMILY DNA-binding pseudobarrel domain 125 270 IPR015300 -
Trre1g02603 697 Pfam B3 DNA binding domain 137 238 IPR003340 GO:0003677
Trre1g02603 697 ProSiteProfiles PB1 domain profile. 616 697 IPR000270 GO:0005515
Trre1g02603 697 MobiDBLite consensus disorder prediction 1 25 - -
Trre1g02603 697 SMART B3_2 137 239 IPR003340 GO:0003677
Trre1g02603 697 FunFam Auxin response factor 135 239 - -
Trre1g02603 697 Pfam Auxin response factor 303 386 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02603 Trre-Chr1 21280581 21283309 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02603 26 694 B3 DNA Binding Superfamily AT4G30080 54.825 0.0 691
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Trre1g02603 B3 4.8e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02603 - - gmx:100796522 993.03