Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02596 ATGTCTACCTCTGCAACTTCCTTAGCACTTCCATCTATCTTCACAAAAAACCCTCTCTCTTCTTCCCCTCAATGTTTCTCTTCACTCCCTTCCCTTTCACTCAACCCTAATTTCAAACCATTTTCCATTTCCTCTGTTTCTCTCCGTTCAACTTTGTCTAACCGTTTCGTTACTCGTGTCGCTGTTTCGTCTGAATTCGACCAGGAAGAAGATACCTTTGATGATAGTGATAGACGTAGTTACCCTGCAACTCAGAGGTTGTTCGTTGGTAACCTTCCTTTCAGTGTTGACAGTGCTCAACTTGCTGAGATTTTTGAGAACGCTGGAAATGTTGAGATGGTTGAGGTTATTTATGATAAAACTACTGGAAGAAGCAGGGGATTTGGTTTTGTGACTATGTCTTCAGCTGATGAAGCTGAAGCTGCTGCTCAGCAGTTAAATGGTTATGAAGTGGATGGAAGGCAATTGAGAGTGAATGCTGGACCACCTCCACCTCGTACCGAGAACTCTCGTTATGGTGACAATTCTCGTTTTGGTGACAGGAGCGGTCCTCCAAGGGGAGGTGGTTTTTCAGGTAGCGAAAACCGTGTTCATGTTGGTAATCTTGCTTGGGGTGTTGACAACTTGGCACTTGAGTCATTGTTTAGCGAACAAGGAAAGGTTTTAGAAGCCAAGGTAATCTATGACAGGGAAAGTGGTAGATCTAGAGGCTTTGGATTTGTGACTTACGGTAGCGCTGAAGAGGTCAACAGTGCTATTCGGTCATTAGATGGTGTGGACTTGAATGGAAGAGCCATACGGGTTGCACCGGCTGATAGTAGACCAAAGCGTGAATTTTGA 840 0.4452 MSTSATSLALPSIFTKNPLSSSPQCFSSLPSLSLNPNFKPFSISSVSLRSTLSNRFVTRVAVSSEFDQEEDTFDDSDRRSYPATQRLFVGNLPFSVDSAQLAEIFENAGNVEMVEVIYDKTTGRSRGFGFVTMSSADEAEAAAQQLNGYEVDGRQLRVNAGPPPPRTENSRYGDNSRFGDRSGPPRGGGFSGSENRVHVGNLAWGVDNLALESLFSEQGKVLEAKVIYDRESGRSRGFGFVTYGSAEEVNSAIRSLDGVDLNGRAIRVAPADSRPKREF 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02596 279 SMART rrm1_1 196 269 IPR000504 GO:0003723
Trre1g02596 279 SMART rrm1_1 86 159 IPR000504 GO:0003723
Trre1g02596 279 MobiDBLite consensus disorder prediction 152 194 - -
Trre1g02596 279 SUPERFAMILY RNA-binding domain, RBD 193 277 IPR035979 GO:0003676
Trre1g02596 279 SUPERFAMILY RNA-binding domain, RBD 82 192 IPR035979 GO:0003676
Trre1g02596 279 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 85 163 IPR000504 GO:0003723
Trre1g02596 279 CDD RRM2_NsCP33_like 196 271 - -
Trre1g02596 279 Gene3D - 60 193 IPR012677 -
Trre1g02596 279 Gene3D - 194 279 IPR012677 -
Trre1g02596 279 PANTHER OS02G0815200 PROTEIN 13 274 - -
Trre1g02596 279 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 198 267 IPR000504 GO:0003723
Trre1g02596 279 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 87 157 IPR000504 GO:0003723
Trre1g02596 279 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 195 273 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02596 Trre-Chr1 21195101 21196772 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02596 84 278 Eukaryotic Initiation Factors Gene Family AT1G49760 32.821 2.17e-22 94.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02596 - - gmx:100786275 343.199