Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02589 ATGAAATGTCAAAGAGTGGATGGATCATATGTGTCTTCCCTTCAAGATGATGAAATGGAAGTTGAACATTTGTTTGAAGAGCCTAGAAACGATCATGTTTCATTGGATGGCAGTTTAGCTTCTCATACAGCTTTGAATGACAAGGATGATTTGGAACTTGAGGTCCTTGATGATTTCCTGGATGATGGATTCCTGGATGATGTTGAAATCGACGATTTTGAAGGACCTGCTGGTTTCTCTGATGCATGTGGAGGATATTTCTTGGATTTTGATTTTGCCAAAGTTGAGCTACTAGGTTCTGGTGCTAATGAAGACTCGCCTGTGGAAAACTCAAATTCAGAAAGTCAATCTCCAGGAGTTAGTGGAAGTAGCACTGTTGGTGGAATATCAGAATCAACAAAAGTACTACCAAATAGTACACAATCTAAATGCAAAATTGAATCTCTAGATGAGACTGTCACCCATGATACAAATGGTCTCTTCAGGAACAATCCAAGTCAACCATCAAATGCAGATTGCATGTACAACATTTCACTTGATATACAGCATCTGCATGAGTTGGATAATGGTTATCCTTTAGCTGGTGGTATATTGTCTTGTAAGAAGGAAAATGTTACTGTTGAAAATAGCCAATCTGCACCACCTAGAGAGAAGAGATTCCGAAAGCCTACACAGAGGTATATTGAAGAATCTTCAAATTTAAAATCAAAGGAAAAAGTCCGAACTACTGGTGCAAAAAAGAAACGACGAAGTGTGTCTTGTAGTGAACTTCATACCAGAACTAAAAGATTGGAAAATATTCCAATCGAGAAGTTTAGTGATTCTGATAGTGATGTGACACTTTATGAGTTACAACACTGCAAGAAGTATCCAAAGAAAGAGAAACTAGAGTATGACGATGAGCCTTTTTCCTCGGAGGCTTCGGAGGAGTCTGAGGATGAAGAATTGACACCAAAAAGATGTAGAACAAAAGATCGAAGAAAGAATCAAAGGATGTGGACAGCCTCTGAAGTGACAAAGTTGATGGATGGCATATCTGAATATGGAGTTGGTCGATGGACTGATATACAGAGGTTTTTGTTTTCTGCTGCAGGCTACCGAACTCCCACAGATATCAGGGACAAGTGGCGTAATCTTTTGCGAGCCTGTTCTTCACAGAAGTTCAACAAGAAAGAGGGCGAACAAAATGACGACGAGAATTCCCCTCGAACCTTACCTCTTAGTGTGGCAAGCCGAGTGCTGGAATTGTCTAAAATCCATCCATACCCAAAGCGACGAAACAAAAAGAGATCATTTGTTGGCCAAGTTGGTTCTTCTGACATTGCTAATGGTTCTTCTATTAGTCTTGGCAGAAGAAATGTACGTAGGAAGAAGTGTACTTAG 1383 0.3984 MKCQRVDGSYVSSLQDDEMEVEHLFEEPRNDHVSLDGSLASHTALNDKDDLELEVLDDFLDDGFLDDVEIDDFEGPAGFSDACGGYFLDFDFAKVELLGSGANEDSPVENSNSESQSPGVSGSSTVGGISESTKVLPNSTQSKCKIESLDETVTHDTNGLFRNNPSQPSNADCMYNISLDIQHLHELDNGYPLAGGILSCKKENVTVENSQSAPPREKRFRKPTQRYIEESSNLKSKEKVRTTGAKKKRRSVSCSELHTRTKRLENIPIEKFSDSDSDVTLYELQHCKKYPKKEKLEYDDEPFSSEASEESEDEELTPKRCRTKDRRKNQRMWTASEVTKLMDGISEYGVGRWTDIQRFLFSAAGYRTPTDIRDKWRNLLRACSSQKFNKKEGEQNDDENSPRTLPLSVASRVLELSKIHPYPKRRNKKRSFVGQVGSSDIANGSSISLGRRNVRRKKCT 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02589 460 MobiDBLite consensus disorder prediction 102 141 - -
Trre1g02589 460 CDD SANT_TRF 331 381 - -
Trre1g02589 460 MobiDBLite consensus disorder prediction 104 141 - -
Trre1g02589 460 ProSiteProfiles Myb-like domain profile. 325 380 IPR001005 -
Trre1g02589 460 Gene3D - 319 432 - -
Trre1g02589 460 SMART sant 329 382 IPR001005 -
Trre1g02589 460 MobiDBLite consensus disorder prediction 313 329 - -
Trre1g02589 460 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 325 384 IPR017930 -
Trre1g02589 460 MobiDBLite consensus disorder prediction 298 329 - -
Trre1g02589 460 Pfam Myb-like DNA-binding domain 333 393 - -
Trre1g02589 460 PANTHER MYB-LIKE DNA-BINDING DOMAIN CONTAINING PROTEIN, EXPRESSED 1 431 - -
Trre1g02589 460 MobiDBLite consensus disorder prediction 229 254 - -
Trre1g02589 460 SUPERFAMILY Homeodomain-like 327 387 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02589 Trre-Chr1 21101887 21105992 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02589 329 391 Single Myb Histone (SMH) Gene Family AT1G72740 36.364 7.40e-06 45.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre1g02589 Myb_DNA-bind_6 2e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02589 - - aprc:113871152 485.337