Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02588 ATGAAATGTCAAAGAATTCAGGTGGATGGATCATATGTGTCTTCCCTTCAAGATGATGAAATGGAAGTTGAACATTTGTTTGAAGAGCCTAGAAACGATCATGTTTCATTGGATGGCAGTTTAGCTTCTCATACAGCTTTGAATGACAAGGATGATTTGGAACTTGAGGTCCTTGATGATTTCCTGGATGATGGATTCCTGGATGATGTTGAAATCGACGATTTTGAAGGACCTGCTGGTTTCTCTGATGCATGTGGAGGATATTTCTTGGATTTTGATTTTGCCAAAGTTGAGCTACTAGGTTCTGGTGCTAATGAAGACTCGCCTGTGGAAAACTCAAATTCAGAAAGTCAATCTCCAGGAGTTAGTGGAAGTAGCACTGTTGGTGGAATATCAGAATCAACAAAAGTACTACCAAATAGTACACAATCTAAATGCAAAATTGAATCTCTAGATGAGACTGTCACCCATGATACAAATGGTCTCTTCAGGAACAATCCAAGTCAACCATCAAATGCAGATTGCATGTACAACATTTCACTTGATATACAGCATCTGCATGAGTTGGATAATGGTTATCCTTTAGCTGGTGGTATATTGTCTTGTAAGAAGGAAAATGTTACTGTTGAAAATAGCCAATCTGCACCACCTAGAGAGAAGAGATTCCGAAAGCCTACACAGAGGTATATTGAAGAATCTTCAAATTTAAAATCAAAGGAAAAAGTCCGAACTACTGGTGCAAAAAAGAAACGACGAAGTGTGTCTTGTAGTGAACTTCATACCAGAACTAAAAGATTGGAAAATATTCCAATCGAGAAGTTTAGTGATTCTGATAGTGATGTGACACTTTATGAGTTACAACACTGCAAGAAGTATCCAAAGAAAGAGAAACTAGAGTATGACGATGAGCCTTTTTCCTCGGAGGCTTCGGAGGAGTCTGAGGATGAAGAATTGACACCAAAAAGATGTAGAACAAAAGATCGAAGAAAGAATCAAAGGATGTGGACAGCCTCTGAAGTGACAAAGTTGATGGATGGCATATCTGAATATGGAGTTGGTCGATGGACTGATATACAGAGGTTTTTGTTTTCTGCTGCAGGCTACCGAACTCCCACAGATATCAGGGACAAGTGGCGTAATCTTTTGCGAGCCTGTTCTTCACAGAAGTTCAACAAGAAAGAGGGCGAACAAAATGACGACGAGAATTCCCCTCGAACCTTACCTCTTAGTGTGGCAAGCCGAGTGCTGGAATTGTCTAAAATCCATCCATACCCAAAGCGACGAAACAAAAAGAGATCATTTGTTGGCCAAGTTGGTTCTTCTGACATTGCTAATGGTTCTTCTATTAGTCTTGGCAGAAGAAATGTACGTAGGAAGAAGTGTACTTAG 1389 0.3981 MKCQRIQVDGSYVSSLQDDEMEVEHLFEEPRNDHVSLDGSLASHTALNDKDDLELEVLDDFLDDGFLDDVEIDDFEGPAGFSDACGGYFLDFDFAKVELLGSGANEDSPVENSNSESQSPGVSGSSTVGGISESTKVLPNSTQSKCKIESLDETVTHDTNGLFRNNPSQPSNADCMYNISLDIQHLHELDNGYPLAGGILSCKKENVTVENSQSAPPREKRFRKPTQRYIEESSNLKSKEKVRTTGAKKKRRSVSCSELHTRTKRLENIPIEKFSDSDSDVTLYELQHCKKYPKKEKLEYDDEPFSSEASEESEDEELTPKRCRTKDRRKNQRMWTASEVTKLMDGISEYGVGRWTDIQRFLFSAAGYRTPTDIRDKWRNLLRACSSQKFNKKEGEQNDDENSPRTLPLSVASRVLELSKIHPYPKRRNKKRSFVGQVGSSDIANGSSISLGRRNVRRKKCT 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02588 462 MobiDBLite consensus disorder prediction 315 331 - -
Trre1g02588 462 MobiDBLite consensus disorder prediction 300 331 - -
Trre1g02588 462 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 327 386 IPR017930 -
Trre1g02588 462 MobiDBLite consensus disorder prediction 231 256 - -
Trre1g02588 462 MobiDBLite consensus disorder prediction 104 143 - -
Trre1g02588 462 CDD SANT_TRF 333 383 - -
Trre1g02588 462 SMART sant 331 384 IPR001005 -
Trre1g02588 462 MobiDBLite consensus disorder prediction 106 143 - -
Trre1g02588 462 Gene3D - 321 434 - -
Trre1g02588 462 Pfam Myb-like DNA-binding domain 335 395 - -
Trre1g02588 462 ProSiteProfiles Myb-like domain profile. 327 382 IPR001005 -
Trre1g02588 462 PANTHER MYB-LIKE DNA-BINDING DOMAIN CONTAINING PROTEIN, EXPRESSED 1 433 - -
Trre1g02588 462 SUPERFAMILY Homeodomain-like 329 389 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02588 Trre-Chr1 21101887 21105992 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02588 331 393 Single Myb Histone (SMH) Gene Family AT1G72740 36.364 7.38e-06 45.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre1g02588 Myb_DNA-bind_6 2e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02588 - - aprc:113871152 488.034