Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02587 ATGGACCGGGAAGAATATTTGCGGAAGTGTTCCAATATGAAATGTCAAAGAGTGGATGGATCATATGTGTCTTCCCTTCAAGATGATGAAATGGAAGTTGAACATTTGTTTGAAGAGCCTAGAAACGATCATGTTTCATTGGATGGCAGTTTAGCTTCTCATACAGCTTTGAATGACAAGGATGATTTGGAACTTGAGGTCCTTGATGATTTCCTGGATGATGGATTCCTGGATGATGTTGAAATCGACGATTTTGAAGGACCTGCTGGTTTCTCTGATGCATGTGGAGGATATTTCTTGGATTTTGATTTTGCCAAAGTTGAGCTACTAGGTTCTGGTGCTAATGAAGACTCGCCTGTGGAAAACTCAAATTCAGAAAGTCAATCTCCAGGAGTTAGTGGAAGTAGCACTGTTGGTGGAATATCAGAATCAACAAAAGTACTACCAAATAGTACACAATCTAAATGCAAAATTGAATCTCTAGATGAGACTGTCACCCATGATACAAATGGTCTCTTCAGGAACAATCCAAGTCAACCATCAAATGCAGATTGCATGTACAACATTTCACTTGATATACAGCATCTGCATGAGTTGGATAATGGTTATCCTTTAGCTGGTGGTATATTGTCTTGTAAGAAGGAAAATGTTACTGTTGAAAATAGCCAATCTGCACCACCTAGAGAGAAGAGATTCCGAAAGCCTACACAGAGAACTAAAAGATTGGAAAATATTCCAATCGAGAAGTTTAGTGATTCTGATAGTGATGTGACACTTTATGAGTTACAACACTGCAAGAAGTATCCAAAGAAAGAGAAACTAGAGTATGACGATGAGCCTTTTTCCTCGGAGGCTTCGGAGGAGTCTGAGGATGAAGAATTGACACCAAAAAGATGTAGAACAAAAGATCGAAGAAAGAATCAAAGGATGTGGACAGCCTCTGAAGTGACAAAGTTGATGGATGGCATATCTGAATATGGAGTTGGTCGATGGACTGATATACAGAGGTTTTTGTTTTCTGCTGCAGGCTACCGAACTCCCACAGATATCAGGGACAAGTGGCGTAATCTTTTGCGAGCCTGTTCTTCACAGAAGTTCAACAAGAAAGAGGGCGAACAAAATGACGACGAGAATTCCCCTCGAACCTTACCTCTTAGTGTGGCAAGCCGAGTGCTGGAATTGTCTAAAATCCATCCATACCCAAAGCGACGAAACAAAAAGAGATCATTTGTTGGCCAAGTTGGTTCTTCTGACATTGCTAATGGTTCTTCTATTAGTCTTGGCAGAAGAAATGTACGTAGGAAGAAGTGTACTTAG 1317 0.4039 MDREEYLRKCSNMKCQRVDGSYVSSLQDDEMEVEHLFEEPRNDHVSLDGSLASHTALNDKDDLELEVLDDFLDDGFLDDVEIDDFEGPAGFSDACGGYFLDFDFAKVELLGSGANEDSPVENSNSESQSPGVSGSSTVGGISESTKVLPNSTQSKCKIESLDETVTHDTNGLFRNNPSQPSNADCMYNISLDIQHLHELDNGYPLAGGILSCKKENVTVENSQSAPPREKRFRKPTQRTKRLENIPIEKFSDSDSDVTLYELQHCKKYPKKEKLEYDDEPFSSEASEESEDEELTPKRCRTKDRRKNQRMWTASEVTKLMDGISEYGVGRWTDIQRFLFSAAGYRTPTDIRDKWRNLLRACSSQKFNKKEGEQNDDENSPRTLPLSVASRVLELSKIHPYPKRRNKKRSFVGQVGSSDIANGSSISLGRRNVRRKKCT 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02587 438 MobiDBLite consensus disorder prediction 226 247 - -
Trre1g02587 438 Pfam Myb-like DNA-binding domain 311 371 - -
Trre1g02587 438 Gene3D - 297 410 - -
Trre1g02587 438 MobiDBLite consensus disorder prediction 116 153 - -
Trre1g02587 438 ProSiteProfiles Myb-like domain profile. 303 358 IPR001005 -
Trre1g02587 438 MobiDBLite consensus disorder prediction 218 247 - -
Trre1g02587 438 MobiDBLite consensus disorder prediction 114 153 - -
Trre1g02587 438 MobiDBLite consensus disorder prediction 276 307 - -
Trre1g02587 438 CDD SANT_TRF 309 359 - -
Trre1g02587 438 PANTHER MYB-LIKE DNA-BINDING DOMAIN CONTAINING PROTEIN, EXPRESSED 7 239 - -
Trre1g02587 438 SUPERFAMILY Homeodomain-like 305 365 IPR009057 -
Trre1g02587 438 MobiDBLite consensus disorder prediction 291 307 - -
Trre1g02587 438 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 303 362 IPR017930 -
Trre1g02587 438 SMART sant 307 360 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02587 Trre-Chr1 21101851 21105992 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02587 307 369 Single Myb Histone (SMH) Gene Family AT1G72740 36.364 7.27e-06 45.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre1g02587 Myb_DNA-bind_6 1.8e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02587 - - gmx:100777720 446.817