Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02586 ATGGACCGGGAAGAATATTTGCGGAAGTGTTCCAATATGAAATGTCAAAGAATTCAGGTGGATGGATCATATGTGTCTTCCCTTCAAGATGATGAAATGGAAGTTGAACATTTGTTTGAAGAGCCTAGAAACGATCATGTTTCATTGGATGGCAGTTTAGCTTCTCATACAGCTTTGAATGACAAGGATGATTTGGAACTTGAGGTCCTTGATGATTTCCTGGATGATGGATTCCTGGATGATGTTGAAATCGACGATTTTGAAGGACCTGCTGGTTTCTCTGATGCATGTGGAGGATATTTCTTGGATTTTGATTTTGCCAAAGTTGAGCTACTAGGTTCTGGTGCTAATGAAGACTCGCCTGTGGAAAACTCAAATTCAGAAAGTCAATCTCCAGGAGTTAGTGGAAGTAGCACTGTTGGTGGAATATCAGAATCAACAAAAGTACTACCAAATAGTACACAATCTAAATGCAAAATTGAATCTCTAGATGAGACTGTCACCCATGATACAAATGGTCTCTTCAGGAACAATCCAAGTCAACCATCAAATGCAGATTGCATGTACAACATTTCACTTGATATACAGCATCTGCATGAGTTGGATAATGGTTATCCTTTAGCTGGTGGTATATTGTCTTGTAAGAAGGAAAATGTTACTGTTGAAAATAGCCAATCTGCACCACCTAGAGAGAAGAGATTCCGAAAGCCTACACAGAGAACTAAAAGATTGGAAAATATTCCAATCGAGAAGTTTAGTGATTCTGATAGTGATGTGACACTTTATGAGTTACAACACTGCAAGAAGTATCCAAAGAAAGAGAAACTAGAGTATGACGATGAGCCTTTTTCCTCGGAGGCTTCGGAGGAGTCTGAGGATGAAGAATTGACACCAAAAAGATGTAGAACAAAAGATCGAAGAAAGAATCAAAGGATGTGGACAGCCTCTGAAGTGACAAAGTTGATGGATGGCATATCTGAATATGGAGTTGGTCGATGGACTGATATACAGAGGTTTTTGTTTTCTGCTGCAGGCTACCGAACTCCCACAGATATCAGGGACAAGTGGCGTAATCTTTTGCGAGCCTGTTCTTCACAGAAGTTCAACAAGAAAGAGGGCGAACAAAATGACGACGAGAATTCCCCTCGAACCTTACCTCTTAGTGTGGCAAGCCGAGTGCTGGAATTGTCTAAAATCCATCCATACCCAAAGCGACGAAACAAAAAGAGATCATTTGTTGGCCAAGTTGGTTCTTCTGACATTGCTAATGGTTCTTCTATTAGTCTTGGCAGAAGAAATGTACGTAGGAAGAAGTGTACTTAG 1323 0.4036 MDREEYLRKCSNMKCQRIQVDGSYVSSLQDDEMEVEHLFEEPRNDHVSLDGSLASHTALNDKDDLELEVLDDFLDDGFLDDVEIDDFEGPAGFSDACGGYFLDFDFAKVELLGSGANEDSPVENSNSESQSPGVSGSSTVGGISESTKVLPNSTQSKCKIESLDETVTHDTNGLFRNNPSQPSNADCMYNISLDIQHLHELDNGYPLAGGILSCKKENVTVENSQSAPPREKRFRKPTQRTKRLENIPIEKFSDSDSDVTLYELQHCKKYPKKEKLEYDDEPFSSEASEESEDEELTPKRCRTKDRRKNQRMWTASEVTKLMDGISEYGVGRWTDIQRFLFSAAGYRTPTDIRDKWRNLLRACSSQKFNKKEGEQNDDENSPRTLPLSVASRVLELSKIHPYPKRRNKKRSFVGQVGSSDIANGSSISLGRRNVRRKKCT 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02586 440 SMART sant 309 362 IPR001005 -
Trre1g02586 440 MobiDBLite consensus disorder prediction 367 386 - -
Trre1g02586 440 MobiDBLite consensus disorder prediction 278 309 - -
Trre1g02586 440 CDD SANT_TRF 311 361 - -
Trre1g02586 440 PANTHER MYB-LIKE DNA-BINDING DOMAIN CONTAINING PROTEIN, EXPRESSED 7 241 - -
Trre1g02586 440 MobiDBLite consensus disorder prediction 293 309 - -
Trre1g02586 440 Gene3D - 299 412 - -
Trre1g02586 440 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 305 364 IPR017930 -
Trre1g02586 440 MobiDBLite consensus disorder prediction 228 249 - -
Trre1g02586 440 MobiDBLite consensus disorder prediction 118 155 - -
Trre1g02586 440 Pfam Myb-like DNA-binding domain 313 373 - -
Trre1g02586 440 MobiDBLite consensus disorder prediction 220 249 - -
Trre1g02586 440 SUPERFAMILY Homeodomain-like 307 367 IPR009057 -
Trre1g02586 440 MobiDBLite consensus disorder prediction 116 155 - -
Trre1g02586 440 ProSiteProfiles Myb-like domain profile. 305 360 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02586 Trre-Chr1 21101851 21105992 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02586 309 371 Single Myb Histone (SMH) Gene Family AT1G72740 36.364 6.81e-06 45.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre1g02586 Myb_DNA-bind_6 1.8e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02586 - - gmx:100810255 451.055