Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02584 ATGCAGTGGAGTTCAAGCCAAGCAGCAATGAATTGTTTTCCGTTCAACATCTATTACGGAGAAAAGAAGGGTGATGCTAAAGGCTTGCAAATGCAATCACTATCGGGTCTATCGAACAACTCTACTTATGGTGGGAGTGAGGTGAGAAGAACTGGTTCTGACTTGAATTCTCTCGATGCCTCGGACAATAGTACAGACTCCCTCAGGAGGAATGCATTTCCCAATTTGTCCCAAAGACCCAGCAACCTGAGAGTATTTACTGTATCTGAGCTGAAATCAGCCACCAAGAATTTTGGTCGATCTGTTATGCTAGGCGAGGGTGGATTCGGGTGTGTCTATAAGGGATTGATCAAGAGTTCAGATGACCCTCCTAGTAAAATTGAAGTTGCAGTTAAACAACTTGGTAAAAGAGGAATTCAGGGGCATAAGGAATGGGTAACTGAAGTGAATGTTCTAGGTATTGTCGAGCATCACAATCTTGTAAAGCTAGTGGGCTATTGTGCTGATGATGATGAAAGAGGAATCCAGCGGCTTTTGATATATGAATATATGCCCAACGGAAGCGTGGAACACCATTTATCTCCACGATCAGAAACTCCTCTCTCATGGAGTAGGAGACTGAAAATAGCCCAAGACGCTGCTCGTGGCTTAACATACCTGCATGAGGAAATGGATTTTCAGATAATTTTCAGAGATTTCAAATCTTCGAATATCCTTCTGGACGAGCAGTGGAATGCAAAGCTGTCTGACTTCGGATTAGCAAGATTGGGACCATCTGATGGGTTAACTCACGTTTCAACAGCGGTTGTAGGAACAATGGGGTATGCTGCTCCTGAATATATTCAAACTGGACGTCTCACTTCAAAGAGTGATGTATGGAGCTACGGCGTCTTTCTCTATGAACTCATTACTGGCAGGCGGCCTTTAGATCGAAATCGTCCCAAGAGTGAACAGAAGCTGCTGGAATGGATAAGACCATACCTTTCAGATGTGAAGAAATTTCAACTAATATTGGATCCAAGACTTGAGAGGAAACACCTCTCAAAGTCAGCCCAAAAACTTGCTTTAGTAGCTAACCGATGCTTGGTCAGAAACCCTAAGAATCGCCCGAAGATGAGTGAAGTATTAGAAATGATTGATCGGATTGTGGAATCTTCGGTTAGTGCTAATCCACAACCACCCTTGAATAGTGTAGCCTCAGCCGATGATTCTCAGAACACTGAAATAAAGAACAAGAAACGGATCATGGATCCAAAACCAGATTGTAATTGGTTTAGGATGTGGAGACCAAAGCTTTTAAGAACATGCTGA 1311 0.4302 MQWSSSQAAMNCFPFNIYYGEKKGDAKGLQMQSLSGLSNNSTYGGSEVRRTGSDLNSLDASDNSTDSLRRNAFPNLSQRPSNLRVFTVSELKSATKNFGRSVMLGEGGFGCVYKGLIKSSDDPPSKIEVAVKQLGKRGIQGHKEWVTEVNVLGIVEHHNLVKLVGYCADDDERGIQRLLIYEYMPNGSVEHHLSPRSETPLSWSRRLKIAQDAARGLTYLHEEMDFQIIFRDFKSSNILLDEQWNAKLSDFGLARLGPSDGLTHVSTAVVGTMGYAAPEYIQTGRLTSKSDVWSYGVFLYELITGRRPLDRNRPKSEQKLLEWIRPYLSDVKKFQLILDPRLERKHLSKSAQKLALVANRCLVRNPKNRPKMSEVLEMIDRIVESSVSANPQPPLNSVASADDSQNTEIKNKKRIMDPKPDCNWFRMWRPKLLRTC 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02584 436 PANTHER OS01G0588500 PROTEIN-RELATED 65 381 - -
Trre1g02584 436 Gene3D Phosphorylase Kinase; domain 1 71 183 - -
Trre1g02584 436 MobiDBLite consensus disorder prediction 387 405 - -
Trre1g02584 436 MobiDBLite consensus disorder prediction 387 407 - -
Trre1g02584 436 FunFam Serine/threonine-protein kinase PCRK2 184 393 - -
Trre1g02584 436 Pfam Protein tyrosine and serine/threonine kinase 103 378 IPR001245 GO:0004672|GO:0006468
Trre1g02584 436 Gene3D Transferase(Phosphotransferase) domain 1 184 400 - -
Trre1g02584 436 CDD STKc_IRAK 104 382 - -
Trre1g02584 436 MobiDBLite consensus disorder prediction 39 74 - -
Trre1g02584 436 ProSitePatterns Protein kinases ATP-binding region signature. 104 132 IPR017441 GO:0005524
Trre1g02584 436 SUPERFAMILY Protein kinase-like (PK-like) 75 379 IPR011009 -
Trre1g02584 436 FunFam Serine/threonine-protein kinase BIK1 65 183 - -
Trre1g02584 436 ProSiteProfiles Protein kinase domain profile. 98 383 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02584 Trre-Chr1 21074515 21077512 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02584 10 379 Glycoside Hydrolase AT3G07070 44.000 3.83e-94 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Trre1g02584 PK_Tyr_Ser-Thr 4.4e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02584 - - gmx:100305438 721.85