Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02582 ATGTCCAAATCAATTTCAAACCCTACAATCACTTCACAACTTGTTATCCAAACATTCTCTCAATCAGAAACCAAACCTTCCACCACCGTCGCCACCACCAGTTCTGATCCCAATGCTCAACTTACCACCGTCAAAAGAAAAACCTCCTCCCGTTCCACCAAAGACCGTCACACCAAAGTGAACGGCCGTGGCCGCCGTGTCCGTATGCCGCCTCTCTGTGCTGCTAGAGTTTTCCAGCTGACTCGTGAATTACGTCACCGTTCCGATGGTGAAACAATCGAGTGGCTTCTCCGACAAGCTGAGCCGGCTATCAAGGCTGCAACCGGTACCGGCACTGTTCCTTCCGGTCCTGTTTCAACAACCTCGCCTGCGTCTTCTTCCTCGAAGCCGTCTGTGTCCTGCAATGTTGCTCGCCCGATATCGTCAGTTGGTCCCAGCGGTGGAGGAATGTTTGCTGCTGCTGCTGCTCTGCCCTTGCAGCAGCCGAGTTGCCGGCTTGATCTCTGTCAGCCGTCTGGACTGGAGTATGCTGCGGTGAATAGGTATCATCATATGCCGTTCACGGCGTTGCTGTTGCAACCGACTACGGTGGAGGAGAATCAGCAAGAAGAAGCTCTGAGCCTGAACGATCAATGA 636 0.5314 MSKSISNPTITSQLVIQTFSQSETKPSTTVATTSSDPNAQLTTVKRKTSSRSTKDRHTKVNGRGRRVRMPPLCAARVFQLTRELRHRSDGETIEWLLRQAEPAIKAATGTGTVPSGPVSTTSPASSSSKPSVSCNVARPISSVGPSGGGMFAAAAALPLQQPSCRLDLCQPSGLEYAAVNRYHHMPFTALLLQPTTVEENQQEEALSLNDQ 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02582 211 MobiDBLite consensus disorder prediction 20 47 - -
Trre1g02582 211 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 29 139 IPR005333 GO:0003700
Trre1g02582 211 Pfam TCP family transcription factor 52 142 IPR017887 -
Trre1g02582 211 MobiDBLite consensus disorder prediction 112 134 - -
Trre1g02582 211 MobiDBLite consensus disorder prediction 20 66 - -
Trre1g02582 211 MobiDBLite consensus disorder prediction 50 64 - -
Trre1g02582 211 ProSiteProfiles TCP domain profile. 53 107 IPR017887 -
Trre1g02582 211 MobiDBLite consensus disorder prediction 107 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02582 Trre-Chr1 21050685 21051320 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02582 53 196 TCP Transcription Factor Family AT2G37000 50.641 7.28e-42 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Trre1g02582 TCP 8.3e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02582 - - cam:101510590 234.187