Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02574 ATGGCTCTTTCTTTTGTTGAGAAGATACAAAAAGGTATCTCACATTTTGTGCACAAAAGGCATGATTTCACTGAAGAGGAGCTGGTTACAGAGGATGTAAGGGAAGGATATTTTGCTGTTGTTGCAATGAAGGATGGTGAAATTAAAAAGTTTATCATTGGTTTAGAGTACTTGAGTGATCCTGAATTTTTGGGACTACTTGATCAAGCTAAGGAAGAGTATGGTTTCATGCACAAAGGAGCTATTGCTGTTCCTTGTCAGCCTCAACAATTACAGAACATTATAGATGGTCAGAGATGA 300 0.3767 MALSFVEKIQKGISHFVHKRHDFTEEELVTEDVREGYFAVVAMKDGEIKKFIIGLEYLSDPEFLGLLDQAKEEYGFMHKGAIAVPCQPQQLQNIIDGQR 99
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02574 99 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 22 93 IPR003676 GO:0009733
Trre1g02574 99 Pfam Auxin responsive protein 25 95 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02574 Trre-Chr1 21011220 21011519 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02574 32 87 Calmodulin-binding Proteins AT3G43120 46.429 1.23e-10 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02574 - K14488 gmx:100798016 130.568
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g02574 1 21011220 21011519 Trre1g02574 1 21011220 21011519 ECH