Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02573 ATGGTTCTTTCTTTTGTTGAGAAGATACAAAAAGGTATCTCACATTTTGTGCACAAAAGACATGATGATTTCAGTGAAGAGCTGCTGGTTCCAGAGGATGTAAGGGAAGGATATTTTGCTGTTGTTGCAATGAAGGATGGTGAAATTAAAAAGTTTATCATTGGTTTAGAGTACTTGAGTGATCCTGAATTTTTGGGACTACTTGATCAAGCTAAGGAAGAGTATGGTTTCATGCACAAAGGAGCTATTGCTGTTCCTTGTCAGCCTCAACAATTACAGAACATTATAGATGGTCAGAGATGA 303 0.3729 MVLSFVEKIQKGISHFVHKRHDDFSEELLVPEDVREGYFAVVAMKDGEIKKFIIGLEYLSDPEFLGLLDQAKEEYGFMHKGAIAVPCQPQQLQNIIDGQR 100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02573 100 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 22 94 IPR003676 GO:0009733
Trre1g02573 100 Pfam Auxin responsive protein 29 96 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02573 Trre-Chr1 20974203 20974505 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02573 31 88 Calmodulin-binding Proteins AT3G43120 46.552 2.21e-11 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02573 - K14488 gmx:100798016 131.339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04293 13 50564059 50564427 Trre1g02573 1 20974203 20974505 PCT