Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02560 ATGCTTAGTTCTTTTGTTGGTAAGGTACAAAAAAGTTTTTCAGTCTTGGTACCAAGAAAGCATGCATTGAGCTATTTTAATGAAGATCATTCCACAACTGAGGTGGTAGCCGATGATGTTATGAAAGGTTATTTTGCTGTTCTTGCAAGGAAGGGTGAGGAAACAAGAAGGTTTATTGTTGGGTTAGATTACTTAACTGATCCTGCTTTTGTTGGATTACTTGATGAAGCTTGGAAGGAATATGGTTTCGGACAGAAGGGAACTCTTGTTGTTCCATGTCGGCCGATAGAATTACAAAACATTTTAGATGGTCGGAAAACATAA 324 0.3765 MLSSFVGKVQKSFSVLVPRKHALSYFNEDHSTTEVVADDVMKGYFAVLARKGEETRRFIVGLDYLTDPAFVGLLDEAWKEYGFGQKGTLVVPCRPIELQNILDGRKT 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02560 107 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 27 100 IPR003676 GO:0009733
Trre1g02560 107 Pfam Auxin responsive protein 32 102 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02560 Trre-Chr1 20864642 20864965 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02560 39 94 Calmodulin-binding Proteins AT3G43120 46.429 1.75e-10 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02560 - K14488 tpra:123895443 176.407
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g02560 1 20864642 20864965 Trre1g02560 1 20864642 20864965 ECH