Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02558 ATGCCTAGTTCTTTTTTTGGGATGGTACAAAAGAGTTTATCAGTCTTTGTACCAAGAAAGCATGCATTGAGCTATTGGAATGAAGATCATACCACAACCACAACTGAACTTGCTGATGATGTCGTCAAAGGTTACTTTGCTGTTCTTGCAAGGAAGGGTGAGGAAACAAGAAGGTTTATTGTTGGGTTAGATTACTTAACTGATCCTGCTTTCTTGGGATTGCTTGATGAAGCTTGGGAGGAATATGGTTTTAGACAGAAAGGAACTCTTGTTGTTCCGTGTCGACCGATAGAATTACAAAACATTTTAGATAGTCGGAAAACATAG 327 0.3884 MPSSFFGMVQKSLSVFVPRKHALSYWNEDHTTTTTELADDVVKGYFAVLARKGEETRRFIVGLDYLTDPAFLGLLDEAWEEYGFRQKGTLVVPCRPIELQNILDSRKT 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02558 108 Pfam Auxin responsive protein 33 104 IPR003676 GO:0009733
Trre1g02558 108 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 27 101 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02558 Trre-Chr1 20859325 20859651 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02558 27 95 Calmodulin-binding Proteins AT3G43120 43.478 2.96e-12 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02558 - K14488 tpra:123895443 181.03