Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02549 ATGGGAGGAAAATGTCCACACAGAAAGGTGAAGAAGAGAAGATTATCTAACAAACAAGATCGCCGTTCTAGATTCCTCATCAAAGGTGATGATATGGTTTATAATCAAGTAAATAAGCCTGAAGAAGAGAGAAAACCTTTGCCTGTTGATGAAGATTTGCCTGGAATGGGACAGCATTATTGCCTTCACTGCGACCGATTCTTTGCCAGTGTAGCTGTTAGGGACGAGCATTTTAAGACAAAGAAACATAGGAGACGTGTGAAACAAATGATGGGTGATGCACCACACACTCAACTGGATGCTGAATTAGCAGCAGGGATGGGAATGCCGGATAATGGACCAAAGTTAATGTCTATGTAA 360 0.4167 MGGKCPHRKVKKRRLSNKQDRRSRFLIKGDDMVYNQVNKPEEERKPLPVDEDLPGMGQHYCLHCDRFFASVAVRDEHFKTKKHRRRVKQMMGDAPHTQLDAELAAGMGMPDNGPKLMSM 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02549 119 PANTHER EXPRESSED PROTEIN 1 119 - -
Trre1g02549 119 MobiDBLite consensus disorder prediction 1 31 - -
Trre1g02549 119 SUPERFAMILY beta-beta-alpha zinc fingers 46 110 IPR036236 -
Trre1g02549 119 Pfam Zinc-finger double-stranded RNA-binding 58 84 IPR022755 -
Trre1g02549 119 Gene3D Classic Zinc Finger 46 109 - -
Trre1g02549 119 ProSitePatterns Zinc finger C2H2 type domain signature. 61 83 IPR013087 -
Trre1g02549 119 SMART ZnF_U1_5 56 90 IPR003604 GO:0003676|GO:0008270
Trre1g02549 119 FunFam Zinc finger protein 593 45 109 - -
Trre1g02549 119 MobiDBLite consensus disorder prediction 1 19 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02549 Trre-Chr1 20788446 20790830 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02549 3 118 C2H2 Transcription Factor Family AT2G36930 72.414 4.07e-61 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02549 K14821 - aew:130770312 218.009