Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02543 ATGGCCAAAAATTGCTTCAACCTCGAAACAATGACGTATTCCTCACCCAGACAACCCATCCACCTTCCAACTGACCCCAACCTCTCTCTAACTTCCTTCCTCTTCCAATCCACTTATTCCCTCGCCGACACCATCGCCATCGCCGATGCTCACTCCGGCGACTCCTTAACCTTCCACCAACTCAAAATCGAAGTCTCTTCCCTCTCTCAATCCTTGCTCCGTATCGGAATTCGACAAGGCGATATCATTTTGCTATTTGCACCTAACTCCATACGCTTCTCCGTCTGTTTCCTCGCTATAGTCGCCATAGGTGCTATTGTCACCACCTGTAGTCCTTTATACACCGTCTCTGAACTCTCCAAGCAAATTCAAGACTCCAAACCAAAGCTTGTTGTAACCGTTTCGGAGCTTTTCAACAAAATAGAAGAATTGAATATTGATTTACCTGTCATATTGCTCAATGATTCTTTGAACAAGTTCGGTTCTAGGTTTTTGAACTATGATGATCTGATCGGAGATTCGTACAATAGCTCCGATGAGATTACGGAGAACAGTGTTGTTTCGCAATCCGACGTGGCGGTAATTCTGTACTCTTCAGGTACTACGGGGAGAAGTAAGGGAGTGATGTTGACTCACCGGAATTTCATAGCGACAGCGGTGGCGGGAGTGGCGGATCAAGACCGTTACGGTGAGGGGAAGAACGTGTTCCTGTGTTTTGTGCCGATGTATCACGTGATGGGATTGGCAGTTATAACGTATACACAGTTGAGGAGAGGGAACACGGTGGTGTCGATGGGGAGATTTGATCTGGAGAAGACTTTAGCGGCGGTGGAGAAGTTTAGGGTGACGCATTTGTATGTTGCTCCGCCGGTGATGGTGGAGCTGATCAAGAGGCGTGACATTGTGAGTGGTTATGATTTGTCGTCGTTGAAGCAACTTGCCGGCGGTGCTGCTCCGTTGGGGAAAGATGTGATGCAAGAGTGTGCTAAGATTCTTCCCCAAGTTGAAATCATTCAGGGGTATGGCATGACTGAAGCATGTGGACTTATTTCCTGTGAAAATCCAAAGGAACTGGAAGGAAACTTTCTTTCAGGTTCAACTGGGACATTACTTTCAAGTTTAGAATCCCGAATTGTTAGTTTGGAAACATTGAATCCCCTCCCACCCAATCAATTAGGGGAAATTTGGCTAAGAGGACCTACTATGATGAAAGGATACTTTAATAATCCAGAAGCAACAAAACAGACGATTAATGATGAGGGTTGGATGATTACAGGTGATCTTGGTTATTTTGATGAAAAGGGACAGTTATTTGTTGTTGATCGAATTAAAGAGCTCATCAAGTGTAACGGGTATCAAGTGGCACCAGCTGAACTTGAAGATTTACTAATTTCTCACCCTGAAATTTCTGATGCTGGTGTGATCCCATCTCCTGATGCCAAAGCCGGTGAGGTTCCGGTGGCTTATGTTGTTCGCTCGCCCAATAGCTCGATAACCGGAGAAGACATTCAAAAGTTTGTAGCAAAACAGGTTGCACCATACAAAAGATTGCGAAGAGTGAATTTTATAGACAAGATTCCAAAGTTACCCACAGGAAAGATCTTAAGAAAGGATCTCGTAAGTCTTGATCGACAAATAAAATCAAAGTTATAG 1653 0.4453 MAKNCFNLETMTYSSPRQPIHLPTDPNLSLTSFLFQSTYSLADTIAIADAHSGDSLTFHQLKIEVSSLSQSLLRIGIRQGDIILLFAPNSIRFSVCFLAIVAIGAIVTTCSPLYTVSELSKQIQDSKPKLVVTVSELFNKIEELNIDLPVILLNDSLNKFGSRFLNYDDLIGDSYNSSDEITENSVVSQSDVAVILYSSGTTGRSKGVMLTHRNFIATAVAGVADQDRYGEGKNVFLCFVPMYHVMGLAVITYTQLRRGNTVVSMGRFDLEKTLAAVEKFRVTHLYVAPPVMVELIKRRDIVSGYDLSSLKQLAGGAAPLGKDVMQECAKILPQVEIIQGYGMTEACGLISCENPKELEGNFLSGSTGTLLSSLESRIVSLETLNPLPPNQLGEIWLRGPTMMKGYFNNPEATKQTINDEGWMITGDLGYFDEKGQLFVVDRIKELIKCNGYQVAPAELEDLLISHPEISDAGVIPSPDAKAGEVPVAYVVRSPNSSITGEDIQKFVAKQVAPYKRLRRVNFIDKIPKLPTGKILRKDLVSLDRQIKSKL 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02543 550 CDD 4CL 22 539 - -
Trre1g02543 550 Pfam AMP-binding enzyme 42 449 IPR000873 -
Trre1g02543 550 SUPERFAMILY Acetyl-CoA synthetase-like 23 543 - -
Trre1g02543 550 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 9 540 - -
Trre1g02543 550 Gene3D - 12 444 IPR042099 -
Trre1g02543 550 FunFam 4-coumarate--CoA ligase 2 445 545 - -
Trre1g02543 550 Pfam AMP-binding enzyme C-terminal domain 458 533 IPR025110 -
Trre1g02543 550 Gene3D - 445 547 IPR045851 -
Trre1g02543 550 FunFam Long-chain-fatty-acid--CoA ligase FadD 14 444 - -
Trre1g02543 550 ProSitePatterns Putative AMP-binding domain signature. 195 206 IPR020845 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02543 Trre-Chr1 20735545 20739363 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02543 13 550 Monolignol Biosynthesis Gene Families AT4G05160 57.615 0.0 625
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02543 K01904 - psat:127097095 867.455