Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02527 ATGCAAGGAGAAAATTTGCGTAAGGGAACTTGGCTTCAAGAAGAAGATGAACAATTGACTAGCTTTGTGACCCGTCTTGGGGAACGAAGGTGGGATTCACTTGCCAAAGTAGCCGGCCTTAGGAGAAGTGGTAAAAGTTGTAGGTTAAGGTGGTTGAACTATCTTCGTCCAAATCTCAAGCATGGCCCTTTTAGTGTTGAAGAAGAGAGGCTTATTATTCAACTTCAGCAGCAATGGGGTAACAAGTGGTCCAAGATTGCTCGTAGCCTTCCTGGAAGAACCGACAATGAAATAAAAAACTATTGGAGAACTCATTTGCAAAAGCGAGTACAAGTTCGATCAACAGAAGGTGAGTTCATGTATAAAGTAGAAAGTGTAGAACATGATTTCAACAATAAAAACATTGATGTGGTTTCTAACAGTGAGGAAGAAGAGACTAAGGAAAGCTCTGAAGACAGTTTTCCTTTATCAGATTGGGGAATGGGGAATTCACCTTATGAAAATAGGATATTTGATTGGATTGTAGAATTGCAAAATGGATATAGTGACAAGGAAAAGGAATTAGAACGAGATTGTAAATCAACACATGAATATAATCCCCAACAAGAATATGATACATGGGATTATTCAGGTATTTTGTGGGATTTATGA 651 0.384 MQGENLRKGTWLQEEDEQLTSFVTRLGERRWDSLAKVAGLRRSGKSCRLRWLNYLRPNLKHGPFSVEEERLIIQLQQQWGNKWSKIARSLPGRTDNEIKNYWRTHLQKRVQVRSTEGEFMYKVESVEHDFNNKNIDVVSNSEEEETKESSEDSFPLSDWGMGNSPYENRIFDWIVELQNGYSDKEKELERDCKSTHEYNPQQEYDTWDYSGILWDL 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02527 216 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 3 55 IPR017930 -
Trre1g02527 216 MobiDBLite consensus disorder prediction 138 159 - -
Trre1g02527 216 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 2 180 IPR044676 GO:0003700|GO:0006355|GO:0043565
Trre1g02527 216 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 56 110 IPR017930 -
Trre1g02527 216 CDD SANT 63 106 IPR001005 -
Trre1g02527 216 Gene3D - 63 110 - -
Trre1g02527 216 CDD SANT 10 55 IPR001005 -
Trre1g02527 216 Gene3D - 8 60 - -
Trre1g02527 216 ProSiteProfiles Myb-like domain profile. 56 106 IPR001005 -
Trre1g02527 216 SUPERFAMILY Homeodomain-like 5 102 IPR009057 -
Trre1g02527 216 ProSiteProfiles Myb-like domain profile. 3 55 IPR001005 -
Trre1g02527 216 SMART sant 60 108 IPR001005 -
Trre1g02527 216 SMART sant 7 57 IPR001005 -
Trre1g02527 216 FunFam Myb transcription factor 8 60 - -
Trre1g02527 216 Pfam Myb-like DNA-binding domain 8 55 IPR001005 -
Trre1g02527 216 Pfam Myb-like DNA-binding domain 62 106 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02527 Trre-Chr1 20549845 20553612 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02527 4 111 MYB Transcription Factor Family AT5G59780 62.963 3.35e-47 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre1g02527 Myb_DNA-binding 5.9e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02527 K09422 - gmx:100783472 302.753