Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02526 ATGCTTAACCTCACTCTTCCTGGTCAACATCCAGACCCAGAATCTGTTGCTATAGAAGTTCACAGGAAAGTGAATGTTTCAATGGGAAGAAGAGAAATGCTATCAATATCAAACAAAGATTTTTCAACATCATGTCTAACAGGAAACCCAATTGATGATTGTTGGAAATGTGACACAAATTGGGCCAATAATCGTCAAAGGTTAGCTGATTGTGCAATTGGGTTTGGACAAAATGCAATTGGAGGAAAAGGTGGTAAATTTTACATTGTAACAGATTCCTCAGACAATGATCCTGTGAATCCAAAACCTGGTACACTTAGATATGCTGTGATACAAAATGAGCCATTGTGGATTGTGTTTCCAAGTAACATGATGATTAAGTTGTCACAAGAGCTTATTTTTAATAGCTTTAAAACCATTGATGGGCGTGGTGCTGATGTTCATATTGTTGGTGGTGGTTGCATTACTCTTCAGTATATAAGTAATGTTATTATACATAACATTCATGTTCACCATTGTCATCCATCTGGCAACACTAATGTGCGGTCGAGTCCAGAACACTACGGATATCGAACATTATCCGATGGAGACGGAATCTCAATATTCGGATCAAGAGACATATGGATCGACCATTGCACACTCTCTCGTTGCAAAGACGGTTTAATAGACGCCGTTATGGGTTCAACGGCAATAACAATCTCTAACAACCATTTCTCACACCACAATGAGGTTATGTTACTAGGTCATAGTGACCACTACAAACCAGATTCAGCAATGCAAGTAACAATAGCATTCAACCATTTTGGTGAACAGTTAGTTCAAAGAATGCCACGTTGCAGGCTAGGATACATCCACGTGGTCAACAATGATTTTACAAGGTGGGAGATGTATGCTATTGGTGGAAGTGGGGGACCAACTATTAATAGTCAAGGTAACCGATATACGGCTCCTGAGGATGTTGATGCGAAACAAGTTACGAAAAGGTTGGATTCGGGTGAAGGGGAATGGACTTCGTGGAATTGGAGATCAGAAGGCGATGTTATGGTGAATGGTGCATTTTTTGTTGATTCAGGTGGTGAGAGTGAAGGGAATTTTGAGAAGGCTTATAGTATTGATCCTAAAGCTGTTGATCGGATTTCAGTTCTTACTATGACTGCTGGTGTTCTTGGTGTTGCTAGGGACAATAATCTGGGAATGTGGACAAGAGCGCCAAATGGTGGTGGTGATTATAGTATTTCATATTCAGGAGGACCAGAAGAGTACACTGATGACATGTCACATAGTACAATGCTGTTGACCTATTCTCTCACTTTGACTCTTGTTTCCATCTTTGTTGCACTTTTTTGTTTGTTGTTTCATGATGTTTCACTATAA 1374 0.3981 MLNLTLPGQHPDPESVAIEVHRKVNVSMGRREMLSISNKDFSTSCLTGNPIDDCWKCDTNWANNRQRLADCAIGFGQNAIGGKGGKFYIVTDSSDNDPVNPKPGTLRYAVIQNEPLWIVFPSNMMIKLSQELIFNSFKTIDGRGADVHIVGGGCITLQYISNVIIHNIHVHHCHPSGNTNVRSSPEHYGYRTLSDGDGISIFGSRDIWIDHCTLSRCKDGLIDAVMGSTAITISNNHFSHHNEVMLLGHSDHYKPDSAMQVTIAFNHFGEQLVQRMPRCRLGYIHVVNNDFTRWEMYAIGGSGGPTINSQGNRYTAPEDVDAKQVTKRLDSGEGEWTSWNWRSEGDVMVNGAFFVDSGGESEGNFEKAYSIDPKAVDRISVLTMTAGVLGVARDNNLGMWTRAPNGGGDYSISYSGGPEEYTDDMSHSTMLLTYSLTLTLVSIFVALFCLLFHDVSL 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02526 457 Gene3D - 48 390 IPR012334 -
Trre1g02526 457 SMART amb_all 123 320 IPR002022 -
Trre1g02526 457 Pfam Pectate lyase 132 300 IPR002022 -
Trre1g02526 457 FunFam Pectate lyase 48 390 - -
Trre1g02526 457 SUPERFAMILY Pectin lyase-like 49 376 IPR011050 -
Trre1g02526 457 PANTHER PECTATE LYASE 18-RELATED 10 392 IPR045032 GO:0030570
Trre1g02526 457 PRINTS Pollen allergen Amb family signature 368 391 IPR018082 -
Trre1g02526 457 PRINTS Pollen allergen Amb family signature 275 294 IPR018082 -
Trre1g02526 457 PRINTS Pollen allergen Amb family signature 71 88 IPR018082 -
Trre1g02526 457 PRINTS Pollen allergen Amb family signature 297 316 IPR018082 -
Trre1g02526 457 PRINTS Pollen allergen Amb family signature 195 216 IPR018082 -
Trre1g02526 457 PRINTS Pollen allergen Amb family signature 131 147 IPR018082 -
Trre1g02526 457 PRINTS Pollen allergen Amb family signature 95 120 IPR018082 -
Trre1g02526 457 PRINTS Pollen allergen Amb family signature 339 363 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02526 Trre-Chr1 20524242 20529579 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02526 1 442 Polysaccharide Lyase AT3G53190 71.875 0.0 637
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02526 K01728 - gmx:100815062 757.288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g02526 1 20524242 20529579 Trre1g02526 1 20524242 20529579 ECH