Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02525 ATGACCCAAACAACCAGCATTTTCCTAATTTCACTTCTTTCTTCATTTTTCACACATGGAACATCAATGCTTAACCTCACTCTTCCTGGTCAACATCCAGACCCAGAATCTGTTGCTATAGAAGTTCACAGGAAAGTGAATGTTTCAATGGGAAGAAGAGAAATGCTATCAATATCAAACAAAGATTTTTCAACATCATGTCTAACAGGAAACCCAATTGATGATTGTTGGAAATGTGACACAAATTGGGCCAATAATCGTCAAAGGTTAGCTGATTGTGCAATTGGGTTTGGACAAAATGCAATTGGAGGAAAAGGTGGTAAATTTTACATTGTAACAGATTCCTCAGACAATGATCCTGTGAATCCAAAACCTGGTACACTTAGATATGCTGTGATACAAAATGAGCCATTGTGGATTGTGTTTCCAAGTAACATGATGATTAAGTTGTCACAAGAGCTTATTTTTAATAGCTTTAAAACCATTGATGGGCGTGGTGCTGATGTTCATATTGTTGGTGGTGGTTGCATTACTCTTCAGTATATAAGTAATGTTATTATACATAACATTCATGTTCACCATTGTCATCCATCTGGCAACACTAATGTGCGGTCGAGTCCAGAACACTACGGATATCGAACATTATCCGATGGAGACGGAATCTCAATATTCGGATCAAGAGACATATGGATCGACCATTGCACACTCTCTCGTTGCAAAGACGGTTTAATAGACGCCGTTATGGGTTCAACGGCAATAACAATCTCTAACAACCATTTCTCACACCACAATGAGGTTATGTTACTAGGTCATAGTGACCACTACAAACCAGATTCAGCAATGCAAGTAACAATAGCATTCAACCATTTTGGTGAACAGTTAGTTCAAAGAATGCCACGTTGCAGGCTAGGATACATCCACGTGGTCAACAATGATTTTACAAGGTGGGAGATGTATGCTATTGGTGGAAGTGGGGGACCAACTATTAATAGTCAAGGTAACCGATATACGGCTCCTGAGGATGTTGATGCGAAACAAGTTACGAAAAGGTTGGATTCGGGTGAAGGGGAATGGACTTCGTGGAATTGGAGATCAGAAGGCGATGTTATGGTGAATGGTGCATTTTTTGTTGATTCAGGTGGTGAGAGTGAAGGGAATTTTGAGAAGGCTTATAGTATTGATCCTAAAGCTGTTGATCGGATTTCAGTTCTTACTATGACTGCTGGTGTTCTTGGTGTTGCTAGGGACAATAATCTGGGAATGTGGACAAGAGCGCCAAATGGTGGTGGTGATTATAGTATTTCATATTCAGGAGGACCAGAAGAGTACACTGATGACATGTCACATAGTACAATGCTGTTGACCTATTCTCTCACTTTGACTCTTGTTTCCATCTTTGTTGCACTTTTTTGTTTGTTGTTTCATGATGTTTCACTATAA 1440 0.3958 MTQTTSIFLISLLSSFFTHGTSMLNLTLPGQHPDPESVAIEVHRKVNVSMGRREMLSISNKDFSTSCLTGNPIDDCWKCDTNWANNRQRLADCAIGFGQNAIGGKGGKFYIVTDSSDNDPVNPKPGTLRYAVIQNEPLWIVFPSNMMIKLSQELIFNSFKTIDGRGADVHIVGGGCITLQYISNVIIHNIHVHHCHPSGNTNVRSSPEHYGYRTLSDGDGISIFGSRDIWIDHCTLSRCKDGLIDAVMGSTAITISNNHFSHHNEVMLLGHSDHYKPDSAMQVTIAFNHFGEQLVQRMPRCRLGYIHVVNNDFTRWEMYAIGGSGGPTINSQGNRYTAPEDVDAKQVTKRLDSGEGEWTSWNWRSEGDVMVNGAFFVDSGGESEGNFEKAYSIDPKAVDRISVLTMTAGVLGVARDNNLGMWTRAPNGGGDYSISYSGGPEEYTDDMSHSTMLLTYSLTLTLVSIFVALFCLLFHDVSL 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02525 479 Pfam Pectate lyase 154 322 IPR002022 -
Trre1g02525 479 FunFam Pectate lyase 70 412 - -
Trre1g02525 479 SUPERFAMILY Pectin lyase-like 71 398 IPR011050 -
Trre1g02525 479 Gene3D - 70 412 IPR012334 -
Trre1g02525 479 PRINTS Pollen allergen Amb family signature 153 169 IPR018082 -
Trre1g02525 479 PRINTS Pollen allergen Amb family signature 117 142 IPR018082 -
Trre1g02525 479 PRINTS Pollen allergen Amb family signature 361 385 IPR018082 -
Trre1g02525 479 PRINTS Pollen allergen Amb family signature 390 413 IPR018082 -
Trre1g02525 479 PRINTS Pollen allergen Amb family signature 319 338 IPR018082 -
Trre1g02525 479 PRINTS Pollen allergen Amb family signature 93 110 IPR018082 -
Trre1g02525 479 PRINTS Pollen allergen Amb family signature 297 316 IPR018082 -
Trre1g02525 479 PRINTS Pollen allergen Amb family signature 217 238 IPR018082 -
Trre1g02525 479 SMART amb_all 145 342 IPR002022 -
Trre1g02525 479 PANTHER PECTATE LYASE 18-RELATED 31 414 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02525 Trre-Chr1 20524176 20529579 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02525 22 464 Polysaccharide Lyase AT3G53190 71.938 0.0 640
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02525 K01728 - gmx:100815062 770.385