Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02510 ATGAGAAACAGCAAAAATGATTCAAACATTCCCATCACCGAAAGGCCTAGATATCAACCGGTATTTCGCAGCATGGACACTTTAAAGGCCGCTGTCAACGAGTTCGTGTCCACATTCATCTTTGTCTTTGCCGCCACAGGCTCTCGAATAGCCGTAAACAAAATCACCGGCGATGCTGTTTTCGGTCTAATTGCCATCGCTATCGCTCACGTGTTTGCCCTCACCGCCGCAGTTTCTGTCGGAATCAGGTATACTAACATGAATCCATACACCTGTTGTGGGCACCTCAACCCTGCTGTTACGTTTGGTGCTTTTATAGGCGGAAATTTACACATCTTGCGTGCTTTGATCTACTGGATTGCTCAGCTCCTTGCCTCCATTGCCGCCTGTGGGCTCCTCGTCTTCGTCCCCGGTGGACAGAAGGTGCCTGTTTTTAGACTTTCAAATGGAGTGGGAGTTGAAAATGCATTGGTGTTGGAGATGGTGATGACGTTCATTTTAATGTTCACGATGTGTGCCACTGTATTTGACCCCAAAGCCACCAAAAGCTATAATGCACAACCAATGAATATTGTGGTCAATGACCAAAATAAGGTAGTTCAAATGCCTCGTTTGAACAGGTTTTCACCACTTGCCATTGGTCTCATTGTTGGAGCAAATATTTTGGTTGGTGGACCTTATGATGGAGCATCTATGAACCCGGCTTTGTCGTTTGGGCCTGCGCTTGTTACTTGGAGCTGGACCAACCATTGGGTCTATTGGGTTGGGCCTCTTATTGGTGGTGGGATTGCTGGTTTTGCTTATGATTTTGCATTTATTACTAAGTAA 828 0.4601 MRNSKNDSNIPITERPRYQPVFRSMDTLKAAVNEFVSTFIFVFAATGSRIAVNKITGDAVFGLIAIAIAHVFALTAAVSVGIRYTNMNPYTCCGHLNPAVTFGAFIGGNLHILRALIYWIAQLLASIAACGLLVFVPGGQKVPVFRLSNGVGVENALVLEMVMTFILMFTMCATVFDPKATKSYNAQPMNIVVNDQNKVVQMPRLNRFSPLAIGLIVGANILVGGPYDGASMNPALSFGPALVTWSWTNHWVYWVGPLIGGGIAGFAYDFAFITK 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02510 275 Pfam Major intrinsic protein 23 192 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre1g02510 275 Pfam Major intrinsic protein 206 268 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre1g02510 275 SUPERFAMILY Aquaporin-like 24 273 IPR023271 -
Trre1g02510 275 PANTHER AQUAPORIN-8 23 273 IPR034294 -
Trre1g02510 275 CDD MIP 29 270 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre1g02510 275 ProSitePatterns MIP family signature. 95 103 IPR022357 -
Trre1g02510 275 Gene3D Glycerol uptake facilitator protein. 19 275 IPR023271 -
Trre1g02510 275 PRINTS Major intrinsic protein family signature 251 271 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre1g02510 275 PRINTS Major intrinsic protein family signature 29 48 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre1g02510 275 PRINTS Major intrinsic protein family signature 77 101 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre1g02510 275 PRINTS Major intrinsic protein family signature 159 177 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre1g02510 275 PRINTS Major intrinsic protein family signature 214 236 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre1g02510 275 PRINTS Major intrinsic protein family signature 114 133 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02510 Trre-Chr1 20369823 20371362 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02510 14 275 Major Intrinsic Protein MIP AT3G26520 51.698 3.11e-84 251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02510 K09873 - gmx:100820403 280.411