Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02508 ATGCAAGTTTTAGAAGATCAACTCATGTTGGTTTCAAAGGATCATATAACTCAACAACAAATCATAAAAGGGAAGCGAACGAAGCGTCAAAGGTTACCTTCTCCACTTAGGTTAGCCATGCCGGCCGCGTCAAATAATTCTTACAATGAAGGTACAAGTTATAATGATAACATGTACAATGATAATTCGAGAGGAATTGAATTTGTTAAAATTGAATTGCGCAACCGATCAGAAAAAGAAAAAGAAGAAGAAGAAGATATGGCGAATTGCTTGATTTTATTAGCTCAAGGTCATAATCGTCGTCATGATCATCAAAATCAAAATCAAGCATATGTGTCAAATGATCATCATGATTACAATAACAACAAACCTTCTTCAAATTTTTATCTTTATGAATGCAAGACTTGCAATCGTTGCTTTCCTTCATTTCAAGCACTTGGTGGTCATAGAGCAAGTCATAGCAAACCTAATAAGGCAAATTGTAACAATATTGTTACACAACAAAAGCAAGAAGTTACAACATCTCCTTTTGTTGATGATCATTATGATCCAACCATGAATACCATACTCTCATTGCAAGCCTTTACGGCCGCGACACCTATTACTACTATTACTACTACTGCTACAAAAAAATCAAAAGTTCATGAGTGTTCGATATGTGGTGCCGAATTTTCATCTGGGCAAGCGTTGGGAGGACATATGCGGCGGCATAGAACTCTTATGAGCACATCAACAACGACCACAACGACAACAACAACACCATCGGTGAGTTTGAGTATCGGTAGCCGTAGCCCTAGATCTCATGAAGCTAAGAAACCAAGAATTGATGGTTTGAAGTTGGATTTGAATCTTCCAGCTCCAGAAGTTGATCAAAGAGATCAATCAAAGTTTTCATTTCAGCAGCCTAGAGAAAATGTTATTGCTTTCTCTAATTCTTCTTTGGTGGATTGCCATTACTAA 960 0.3708 MQVLEDQLMLVSKDHITQQQIIKGKRTKRQRLPSPLRLAMPAASNNSYNEGTSYNDNMYNDNSRGIEFVKIELRNRSEKEKEEEEDMANCLILLAQGHNRRHDHQNQNQAYVSNDHHDYNNNKPSSNFYLYECKTCNRCFPSFQALGGHRASHSKPNKANCNNIVTQQKQEVTTSPFVDDHYDPTMNTILSLQAFTAATPITTITTTATKKSKVHECSICGAEFSSGQALGGHMRRHRTLMSTSTTTTTTTTTPSVSLSIGSRSPRSHEAKKPRIDGLKLDLNLPAPEVDQRDQSKFSFQQPRENVIAFSNSSLVDCHY 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02508 319 ProSiteProfiles Zinc finger C2H2 type domain profile. 215 237 IPR013087 -
Trre1g02508 319 MobiDBLite consensus disorder prediction 243 277 - -
Trre1g02508 319 Gene3D Classic Zinc Finger 195 259 - -
Trre1g02508 319 Pfam C2H2-type zinc finger 214 238 - -
Trre1g02508 319 Pfam C2H2-type zinc finger 131 156 - -
Trre1g02508 319 SMART c2h2final6 131 153 IPR013087 -
Trre1g02508 319 SMART c2h2final6 215 237 IPR013087 -
Trre1g02508 319 ProSiteProfiles Zinc finger C2H2 type domain profile. 131 158 IPR013087 -
Trre1g02508 319 MobiDBLite consensus disorder prediction 243 264 - -
Trre1g02508 319 ProSitePatterns Zinc finger C2H2 type domain signature. 133 153 IPR013087 -
Trre1g02508 319 ProSitePatterns Zinc finger C2H2 type domain signature. 217 237 IPR013087 -
Trre1g02508 319 SUPERFAMILY beta-beta-alpha zinc fingers 130 237 IPR036236 -
Trre1g02508 319 PANTHER ZINC FINGER PROTEIN ZAT5 76 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02508 Trre-Chr1 20357901 20358860 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02508 3 319 C2H2 Transcription Factor Family AT5G03510 39.820 1.07e-54 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre1g02508 zf-C2H2_6 1.3e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02508 - - tpra:123884313 537.339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g02508 1 20357901 20358860 Trre7g01530 7 11519543 11520427 ECH
Trre1g02508 1 20357901 20358860 Trre1g02508 1 20357901 20358860 ECH
Trre1g02508 1 20357901 20358860 Trre11g03653 11 49823564 49824454 ECH