Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02507 ATGGCGGTTCCTGGGAGGCGCAATGGTATGAACGAAGACGATGAAGATGAATCCAACGGTCTTTTCGAAGAAGTTCTCGTTGAAGAAACTGATACTCCTCCTCATCTTCGTGATCTCTCCCATGCCGCTCAAAACGGCGACCTCAACGCTCTCCGTCTCGCTCTCGATAACTTGAGTGGTAGTATTGATGAACCGGTGGAGGATGGCGATACGGCGCTTCATTTGACCTGTTTATATGGCCATTTCCAATGCGCACAGCTGCTACTAGAAAGAGGAGCTGACTTGGAAGCTAAGGATGAAGATGGGGCAATTCCTTTACACGATGCATGTGCGGGAGGATTTTTGGAGATAGTCCAACTTCTATTTAACAGAGCTAGTGACGCTGAGCATATAAAAAGGATGCTAGAATCAGTTGATTCCGAGGGTGATACTCCTCTTCATCATGCTGCAAGAGGTGAGCATGCTGATGTAATTAGGTTGTTGCTGTCTAATGGTGCGTCATCCACAAAGCAAAACTTATATGGAAAGACCCCTGCGGAGTTACCTGAACACAGCACGGAAGCTAGGAGGCTGCTTGAAGCTGCTGCTACCGCCATGGCAATCTAA 606 0.4785 MAVPGRRNGMNEDDEDESNGLFEEVLVEETDTPPHLRDLSHAAQNGDLNALRLALDNLSGSIDEPVEDGDTALHLTCLYGHFQCAQLLLERGADLEAKDEDGAIPLHDACAGGFLEIVQLLFNRASDAEHIKRMLESVDSEGDTPLHHAARGEHADVIRLLLSNGASSTKQNLYGKTPAELPEHSTEARRLLEAAATAMAI 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02507 201 ProSiteProfiles Ankyrin repeat profile. 101 133 IPR002110 GO:0005515
Trre1g02507 201 Pfam Ankyrin repeats (3 copies) 39 99 IPR002110 GO:0005515
Trre1g02507 201 Pfam Ankyrin repeats (3 copies) 101 171 IPR002110 GO:0005515
Trre1g02507 201 ProSiteProfiles Ankyrin repeat profile. 141 173 IPR002110 GO:0005515
Trre1g02507 201 FunFam BRCA1-associated RING domain protein 1 33 200 - -
Trre1g02507 201 ProSiteProfiles Ankyrin repeat region circular profile. 101 127 - -
Trre1g02507 201 SUPERFAMILY Ankyrin repeat 39 181 IPR036770 -
Trre1g02507 201 Gene3D - 33 200 IPR036770 -
Trre1g02507 201 SMART ANK_2a 34 64 IPR002110 GO:0005515
Trre1g02507 201 SMART ANK_2a 101 130 IPR002110 GO:0005515
Trre1g02507 201 SMART ANK_2a 141 170 IPR002110 GO:0005515
Trre1g02507 201 SMART ANK_2a 68 97 IPR002110 GO:0005515
Trre1g02507 201 PANTHER SOWAH (DROSOPHILA) HOMOLOG 6 197 - -
Trre1g02507 201 ProSiteProfiles Ankyrin repeat region circular profile. 68 100 - -
Trre1g02507 201 ProSiteProfiles Ankyrin repeat region circular profile. 141 167 - -
Trre1g02507 201 ProSiteProfiles Ankyrin repeat profile. 68 100 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02507 Trre-Chr1 20352096 20353741 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02507 39 184 Ion Channels AT2G25600 31.429 1.80e-13 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02507 - - gmx:100527544 302.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g02507 1 20352096 20353741 Trre1g02507 1 20352096 20353741 ECH