Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02496 ATGGAAACCACCAACCAAAACCTCGAAACTGACACTTTCAAGATGCAGCAGCAACGGCGGCGAAGTCAATTGGTGGTGAACGGTTACTTCGTTTACACACGACGAAAGAGGATCGAGCATGATTCCGACAACGAGAAAGCGAAGAGGTTGAGAACCGAAGAAAATGAACAAGTTAAGGTGAAAATTGGTGAGGCGGTGAAGAACGACGTCGTTTTATGGACTTCGAAACGGCAGCGGAGACCGTCGTTTAAGTTGAAGGTTGAATCAGAAGATGATGGTTCTGGTGATAAGGTAGCTGCTCGCGTTGTGAATACGAAGAAGAGCGTTGCGTTTAACGAGAAGCTAATGTCTGTGAAGGAGCTCTTTGATACTGGTTTGCTCGACGGTGTTCCAGTTGTTTACGTCGGTTGCAAGAAGGAGGCTTCGGATTCGGGATTGCAGGGTGTAATTGCTGGTGGGGGGATATTGTGCTCGTGCTGTCTGTGCAATGGACGTAGAATTATTCCCCCCTCCCAATTTGAGATTCATGCCTGCAAAATATATAAAAGGGCAACACAGTATATTTGTTTTGAAAATGGGAAGAGTCTGCTTGAACTACTGGGAGTTTGCAGGGCAGCTCCCTTACATGCTTTGGAGGCCACTATTCAAAACTTTCTTTGTTTACCACCTGAAGAGAAATATTTTACTTGCAGGAGTTGCAGAGGGTGTTTCCCTGTTTCAACTGTGAAAAGAGTGGGGCTTATATGCCATTCTTGCATGGAAACAAGTAAATCTGAAAATGGTTCTATTCGTGCGGTTGGCAAAAGAGTCAGGACTCCTCGGCCGTATTTGTTCTCTAGTCCATCTAGTATTTCTGAAACGTGTGTCTCATCACAAACTAAGAAACAAAAGAAGAGAACAAAGTCATCAAAACGGGTTAGCATGTCAAAATCTTCCAGGAAGAGTGCTTCCGCGCCTGTGCTTATTCAGAAGAAAAGTTTGTGCAACATGGAAACAAAGTCATCAAAACTGACAGTCAAGTTGAAGATTGCTCCAGTTACGTCAAATTCAAAGTGTTCATCTCCACAAAATAAGAGTCAATGGAAGATCAATAAGAAGCATCAGCGATTGCATAAAATAATTTTTGAAGAAGATGGATTGCCTGATGGAGCTGAAGTAGCTTATTATGCCCGTGGACAGAAATATCTTGAGGGTATTAAAAATAAATCTGGAATTATTTGTCGATGCTGCAACACTGAGATCAGCCCCGCACAGTTTGAGATTCATGCAGGGTGGGCTTATCGTAGGAAGCCTTATGCATACATCTATACTTCAAATGGGGTGTCTCTCCACGAGTTGGCATTATTCCTCTCAAAAGAGCGCAAATGCACTGCAAAATATAATGATCATGCATGCATTGTTTGTTGGGATGGTGGAAATCTGTTGCTCTGTGATGGATGCCCAAGGGCATTTCATAAAGAATGTGCATCTGTATCAAGTACTCCACGACGTGGTCGGTACTGTCCAATCTGTCAACACAAGTTCCTTGGAGAAGGATCCGTGGCTCTCAATCCTGATGCTGTGGCAGCTGGAAGGGTTGAAGGAGTTGATCCTATAGAACAGATTGCTAAGAGATGCATTCGGATAGTGAAAGACATCGAAGCTGAGATTGGTGGATGTGCTGGTGGATGTGCTGGTGGATGTGCTTTATGCAGAGGTTCTGACTTCAGCAGATCAGGATTTGGTCCACGTACAATAATAATATGTGATCAGTGTGAAAAGGAATATCACGTGGGCTGTTTGAGGGATCATAAAATGGCATATTTGAAGGAATTGCCGGAAGGGGATTGGCTTTGCTGCAATGATTGCATAAGAATACATTCTATTTTAGGGAACCTCCTAGTTAGGGTGGCTGAGAGTCTCCCTGAATCTCTTTTGGATGTTATAAAGAAAAAGCAAGAAGAAAGATGTTTGGAACCCCTTAATGAGATTGATATAAGATGGAAACTTGTTAATGGCAAAGTTGCTTCTCCTGAAACCAGGCCGTTGCTTTTGGAGGCACTGTCAATATTCAACGAATGCTTTGATCCTATAGTTGACGCAGCTACCGAACGTGACCTTATTCCTTCCATGGTTTATGGAAGGAATTTGCAGACTCAGGATTTTGGAGGAATGTATTGTGCATTATTAATGGTCAATTCATTTGTGGTATCTGCGGGCATGCTTCGGATTTTTGGGAGAGATATTGCAGAACTCCCTTTAATTGCTACAAGACACAAGAACCGTGGAAAGGGCTACTTCCAAACATTGTTCTCGTGTATTGAAAGGTTGCTGGCCTTCTTGAATGTGAAGAACCTTGTGCTACCAGCTGCTGAAGAAGCAGTATCCATATGGATAAATAAATTTGGGTTTAGCAGGATGAGACCCGAGCAGATTGTCAACTATAGAAAGAACTGCCAGCAGATGATGGCATTCAAAGGGACAGTTATGCTTCATAAAACAGTACCTCAATGTCGGGTAATTAAATCATGA 2511 0.4289 METTNQNLETDTFKMQQQRRRSQLVVNGYFVYTRRKRIEHDSDNEKAKRLRTEENEQVKVKIGEAVKNDVVLWTSKRQRRPSFKLKVESEDDGSGDKVAARVVNTKKSVAFNEKLMSVKELFDTGLLDGVPVVYVGCKKEASDSGLQGVIAGGGILCSCCLCNGRRIIPPSQFEIHACKIYKRATQYICFENGKSLLELLGVCRAAPLHALEATIQNFLCLPPEEKYFTCRSCRGCFPVSTVKRVGLICHSCMETSKSENGSIRAVGKRVRTPRPYLFSSPSSISETCVSSQTKKQKKRTKSSKRVSMSKSSRKSASAPVLIQKKSLCNMETKSSKLTVKLKIAPVTSNSKCSSPQNKSQWKINKKHQRLHKIIFEEDGLPDGAEVAYYARGQKYLEGIKNKSGIICRCCNTEISPAQFEIHAGWAYRRKPYAYIYTSNGVSLHELALFLSKERKCTAKYNDHACIVCWDGGNLLLCDGCPRAFHKECASVSSTPRRGRYCPICQHKFLGEGSVALNPDAVAAGRVEGVDPIEQIAKRCIRIVKDIEAEIGGCAGGCAGGCALCRGSDFSRSGFGPRTIIICDQCEKEYHVGCLRDHKMAYLKELPEGDWLCCNDCIRIHSILGNLLVRVAESLPESLLDVIKKKQEERCLEPLNEIDIRWKLVNGKVASPETRPLLLEALSIFNECFDPIVDAATERDLIPSMVYGRNLQTQDFGGMYCALLMVNSFVVSAGMLRIFGRDIAELPLIATRHKNRGKGYFQTLFSCIERLLAFLNVKNLVLPAAEEAVSIWINKFGFSRMRPEQIVNYRKNCQQMMAFKGTVMLHKTVPQCRVIKS 836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02496 836 SMART PHD_3 560 617 IPR001965 -
Trre1g02496 836 SMART PHD_3 464 505 IPR001965 -
Trre1g02496 836 SUPERFAMILY FYVE/PHD zinc finger 460 508 IPR011011 -
Trre1g02496 836 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 559 619 IPR013083 -
Trre1g02496 836 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 557 619 - -
Trre1g02496 836 MobiDBLite consensus disorder prediction 294 308 - -
Trre1g02496 836 PANTHER AUTOIMMUNE REGULATOR 66 827 - -
Trre1g02496 836 ProSiteProfiles Zinc finger PHD-type profile. 462 507 IPR019787 -
Trre1g02496 836 MobiDBLite consensus disorder prediction 277 318 - -
Trre1g02496 836 MobiDBLite consensus disorder prediction 277 291 - -
Trre1g02496 836 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 710 801 IPR016181 -
Trre1g02496 836 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 450 540 IPR013083 -
Trre1g02496 836 Pfam Tify domain binding domain 402 447 IPR032308 -
Trre1g02496 836 Pfam Tify domain binding domain 148 200 IPR032308 -
Trre1g02496 836 Gene3D - 657 827 - -
Trre1g02496 836 SUPERFAMILY FYVE/PHD zinc finger 561 614 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02496 Trre-Chr1 20218470 20225638 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02496 96 834 PHD Transcription Factor Family AT2G36720 49.735 0.0 735
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02496 - - gmx:100798276 1129.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g02496 1 20218470 20225638 Trre1g02496 1 20218470 20225638 ECH
Trre13g04362 13 51282488 51290526 Trre1g02496 1 20218470 20225638 PCT