Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02493 ATGCCATCATCATCTCTCTCTCATCTTTCTCTCTCTTTCCTCCCCAAACTACCACACACTACTCTCCCTCAAAAATCATCTTATCCACTTCACCATCTCTCAATAAAATCATCAATCAACAACAAAACCCCACAAAAAATCACAAAAACAAGTTCATGGGTTAGTCCAGATTGGCTCACTTCACTATCCAAGTCTCTAACAACATCAGGAAAAGATGATGATTCTGGTATTCCTATAGCAAGTGCTAAGCTTGATGATGTTTCTGATCTTTTGGGTGGTGCTCTTTTTCTTCCTTTGTTTAAATGGATGAATGAGTATGGTCCTATTTATCGTTTAGCTGCTGGTCCTAGAAATTTTGTTGTTGTTAGTGATCCTGCTATTGCTAAACATGTGCTTAAGAATTATGGTAAATATGGTAAAGGGCTTGTTGCTGAAGTTTCTGAGTTTCTTTTTGGTTCTGGTTTTGCTATTGCTGAAGGTTCTCTATGGACGGCAAGGCGCAGAGCCGTCGTTCCATCTCTTCACAAACGGTACTTGTCTATTATGGTGGATAGGGTGTTTTGTAGATGTGCCGAGAGATTAGTAGAGAAGCTACAATCTGATGCAATTAATGGAACTCCTGTTAACATGGAGGACAAGTTTTCTCAATTAACCCTTGATGTTATCGGTTTATCTGTATTCAACTACAACTTTGATGCACTGAATTCAGACAGTCCTGTTATTGAAGCTGTTTACACTGCGCTAAAAGAGGCGGAGGCTCGCTCAACCGATCTCTTACCGTATTGGAAGGTTAATTTTCTTTGTAAGATAATCCCAAGACAAATAAAGGCTGAAAATGCCGTTAGTATTATCAGGAAAACAGTAGAAGATCTTATTGCAAAATGCAAAGAGATTGTAGAGTCTGAGGGTGAAAGAATTGATGCTGATGAATATGTCAATGACGCTGATCCTAGTATTCTTCGATTTTTGCTTGCCAGCAGAGAAGAGGTTTCAAGTGTGCAATTAAGGGATGATCTTTTGTCAATGTTAGTCGCTGGTCATGAGACCACCGGTTCAGTGCTGACTTGGACGCTTTATCTTCTAAGTAAGGATCCTTCCTCATTGGCAAAAGCACAAGAAGAGATAGACAGAGTTTTACAGGGAAGGCGTCCTTCTTATGAAGATATTAAAGATCTTAAGTTCTTGAATCGCTGTATTATCGAGTCACTCCGACTTTATCCGCATCCTCCTGTATTGATAAGAAGATCTCAAATTCCTGATGAACTTCCGGGTGATTACAAAATCAATGCTGGTCAAGATATTATGATTTCTGTGTACAACATACATCATTCTTCTAAGGTTTGGGATAGAGCCGAAGAGTTTTTGCCGGATAGATTTGATTTGAATGGTCCAGTGCCAAATGAAACAAATACAGATTTCAGATTCATTCCATTTAGCGGAGGGCCACGAAAGTGTGTTGGTGATCAGTTTGCTTTATTGGAAGCTACCGTTGCTCTTGCGGTCTTTCTACAGCACATGAACTTTGAGCTGGTCCCTGATCAAAATATCAGCATGACTACTGGTGCAACAATACATACCACAAATGGCTTGTACATGAAACTTAGCAGACGGTTGAAATAG 1620 0.3969 MPSSSLSHLSLSFLPKLPHTTLPQKSSYPLHHLSIKSSINNKTPQKITKTSSWVSPDWLTSLSKSLTTSGKDDDSGIPIASAKLDDVSDLLGGALFLPLFKWMNEYGPIYRLAAGPRNFVVVSDPAIAKHVLKNYGKYGKGLVAEVSEFLFGSGFAIAEGSLWTARRRAVVPSLHKRYLSIMVDRVFCRCAERLVEKLQSDAINGTPVNMEDKFSQLTLDVIGLSVFNYNFDALNSDSPVIEAVYTALKEAEARSTDLLPYWKVNFLCKIIPRQIKAENAVSIIRKTVEDLIAKCKEIVESEGERIDADEYVNDADPSILRFLLASREEVSSVQLRDDLLSMLVAGHETTGSVLTWTLYLLSKDPSSLAKAQEEIDRVLQGRRPSYEDIKDLKFLNRCIIESLRLYPHPPVLIRRSQIPDELPGDYKINAGQDIMISVYNIHHSSKVWDRAEEFLPDRFDLNGPVPNETNTDFRFIPFSGGPRKCVGDQFALLEATVALAVFLQHMNFELVPDQNISMTTGATIHTTNGLYMKLSRRLK 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02493 539 CDD CYP97 97 531 - -
Trre1g02493 539 SUPERFAMILY Cytochrome P450 91 537 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g02493 539 Pfam Cytochrome P450 99 521 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g02493 539 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 478 487 IPR017972 GO:0005506|GO:0016705
Trre1g02493 539 Gene3D Cytochrome P450 78 539 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g02493 539 PRINTS E-class P450 group I signature 475 485 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g02493 539 PRINTS E-class P450 group I signature 354 380 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g02493 539 PRINTS E-class P450 group I signature 334 351 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g02493 539 PRINTS E-class P450 group I signature 485 508 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g02493 539 PRINTS E-class P450 group I signature 437 461 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g02493 539 PRINTS E-class P450 group I signature 103 122 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g02493 539 PRINTS E-class P450 group I signature 396 414 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g02493 539 PRINTS E-class P450 group I signature 217 235 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g02493 539 PANTHER CYTOCHROME P450 FAMILY 4 99 537 - -
Trre1g02493 539 PRINTS P450 superfamily signature 476 485 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g02493 539 PRINTS P450 superfamily signature 397 408 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g02493 539 PRINTS P450 superfamily signature 485 496 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g02493 539 PRINTS P450 superfamily signature 345 362 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02493 Trre-Chr1 20185519 20189832 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02493 26 537 Cytochrome P450 AT3G53130 79.612 0.0 868
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02493 K09837 - gmx:100803324 896.73