Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02490 ATGTTGGTTCCTCCATGGCTCAAGCCACTTCTTAACACACCATTTTTCAATGTTTGTCGGGTTCACCGCGATGCTGCAAGAAGTGAATGTAACATGTTTTGTCTAGATTGCAATGTTGATGCCTTTTGCTTCTATTGTCGTTCTTCAAGACACAAGGATCATCAAGTCATTCAGATACGACGATCTTCGTATCACGATGTAGTGAGGGTGGGTGAAATTCAGAAAATGTTGGACATTAGTGGAGTTCAAACATATGTGATTAATAGTGCTAGAGTTTTGTTTCTCAATGAAAGGCCTCAACCAAAAACTGGAAAAGCTGTTTCTTACATTTGTGAGATTTGTGGAAGAGGCCTTTTAGACCATGTTCGTTTCTGTTCTTTGGGATGTAAGCTTGTAGGAATAAAGAGAAATGGGAATGCAAGCTTTGTTTTAGATGCTAATAACAAGGAAGTATCAACAATGGAAGAAGGGATGTCAAGGCAACAAGAAGAAGAATTGCGTGAAGGCTCACAACAAGGCATGTATCCAGCCACACCTCCTTCAAATGCAAGGAGAAGAAAAGGGATTCCTCATAGGGCTCCTTTTGGATCCTAA 594 0.404 MLVPPWLKPLLNTPFFNVCRVHRDAARSECNMFCLDCNVDAFCFYCRSSRHKDHQVIQIRRSSYHDVVRVGEIQKMLDISGVQTYVINSARVLFLNERPQPKTGKAVSYICEICGRGLLDHVRFCSLGCKLVGIKRNGNASFVLDANNKEVSTMEEGMSRQQEEELREGSQQGMYPATPPSNARRRKGIPHRAPFGS 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02490 197 CDD Bbox2 18 59 - -
Trre1g02490 197 MobiDBLite consensus disorder prediction 153 197 - -
Trre1g02490 197 Pfam PLATZ transcription factor 60 131 IPR006734 -
Trre1g02490 197 Gene3D Classic Zinc Finger 14 78 - -
Trre1g02490 197 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 3 195 - -
Trre1g02490 197 SUPERFAMILY B-box zinc-binding domain 16 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02490 Trre-Chr1 20158797 20159928 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Trre1g02490 PLATZ 2.1e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02490 - - gmx:100809455 340.887
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04370 13 51335189 51337561 Trre1g02490 1 20158797 20159928 PCT