Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre1g02487 | ATGGAACAATCTTCTACAACCTCTCCACCACCGCCGACTAAAAGCTGGGCCGATCAAGCAGACGACGAAGATGCCAATCCATCCTCAAGCTCCGCCGCCGAAACCGAAATACCTTCTGTCGATGAATTAACAATCGACGAGGACAAGAAGTCTTCTTCTAAATTATTAGACGATCCCGATGACGCCAACATTCAAGCGGTAACATCTTGTGATACTCCATATACATCGGCGGCGACATTTGAAGAATTGTCACTCTCTCCGGAGCTTTTGAAGGGACTCTATGTAGAGATGAAGTTTCAAAAACCTAGCAAAATTCAAGCTGTGAGTTTGCCTATGATTCTAAATCCTCCACATAGGGATTTGATAGCGCAGGCACATAATGGTTCAGGAAAAACCACTTGTTTTGTGCTTGGGATGCTTAGTCGTGTTGATCCAACCTTGCAAGCTCCTCAAGCTCTTTGCATTTGCCCCACTAGAGAGTTAGCTATTCAGAATGTTGAGGTTCTCCGTAAGATGGGGAAGTACACAGGGATTAGCTCAGAATCTGCAGTTCCTATGGACAAAAGGGATTCAATTCCGATATCAAAAAGGTCGCCTATTATGGCTCAGGTTGTTATTGGAACTCCTGGCACGATTAAGAATTTGATGACTTATAAGAAACTTGGGGTGACAAGATTGAAGATTCTTGTTTTTGATGAGGCCGATCAAATGCTTGCTGAGGATGGATTTAAAGATGATTCTCTGAGGATAATGAAAGAAATAGAAAAGTTCAATTCAAACTGTCAGGTTCTTCTGTTTTCTGCTACGTTTAATGACACTGTCAAGACTTTTGTTACAAGGATTGTTGAGAAGAAGGAACATAATAAACTTTTTGTGAAGAAAGAGGAGCTATCTTTAGATGCGGTGAAGCAGTTCAAAGTTCATGTTCCTGATGAACTTGAGAAGATTGAAGTGATTAAAGATTATATATTTGAAATAGGAGAGAATTTGGGGCAAACTATTATATTTGTGCGCACTAAAAGTAGTGCAAAAATGTTGCATAAAGCTCTTGTTGATTTAGGCTATGAGGTTACTTCGATACACGGTAATCTTGAACATGACGAGAGAGACAAGATTGTCAAGGAGTTTAAAGATGGTTTGACTCAGGTTCTTATATCAACTGATGTTCTTGCCCGTGGCTTTGATCAGCAACAGGTTAATTTGGTTATCAATTATGATCTTCCAATGAAGTACGTTCCCCAGCACCTCCGTGACCGTGACCGTGAATCTGAGCCTGATTTTGAGGTGTATTTGCATAGGGTTGGTAGGGCTGGGCGATTTGGGCGCAAGGGGGCTGTATTTAACCTGATATGTGGTAAATGGGATGAAGCGCTCATGTCAAAGATTGAAAACCATTTTGGCACACATATAAAAGAGGTGAAACGAAAAAGTATCGAAGACTATAAAGCTGCTCTTAAGGATGCTGGTTTACTGTTTTGA | 1479 | 0.4097 | MEQSSTTSPPPPTKSWADQADDEDANPSSSSAAETEIPSVDELTIDEDKKSSSKLLDDPDDANIQAVTSCDTPYTSAATFEELSLSPELLKGLYVEMKFQKPSKIQAVSLPMILNPPHRDLIAQAHNGSGKTTCFVLGMLSRVDPTLQAPQALCICPTRELAIQNVEVLRKMGKYTGISSESAVPMDKRDSIPISKRSPIMAQVVIGTPGTIKNLMTYKKLGVTRLKILVFDEADQMLAEDGFKDDSLRIMKEIEKFNSNCQVLLFSATFNDTVKTFVTRIVEKKEHNKLFVKKEELSLDAVKQFKVHVPDELEKIEVIKDYIFEIGENLGQTIIFVRTKSSAKMLHKALVDLGYEVTSIHGNLEHDERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLVINYDLPMKYVPQHLRDRDRESEPDFEVYLHRVGRAGRFGRKGAVFNLICGKWDEALMSKIENHFGTHIKEVKRKSIEDYKAALKDAGLLF | 492 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre1g02487 | 492 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 150 | 453 | IPR027417 | - | |
Trre1g02487 | 492 | Gene3D | - | 296 | 482 | IPR027417 | - | |
Trre1g02487 | 492 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 112 | 288 | IPR014001 | - | |
Trre1g02487 | 492 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 318 | 489 | IPR001650 | - | |
Trre1g02487 | 492 | CDD | DEADc_DDX19_DDX25 | 85 | 282 | - | - | |
Trre1g02487 | 492 | Pfam | DEAD/DEAH box helicase | 104 | 276 | IPR011545 | GO:0003676|GO:0005524 | |
Trre1g02487 | 492 | Gene3D | - | 57 | 295 | IPR027417 | - | |
Trre1g02487 | 492 | SMART | ultradead3 | 98 | 305 | IPR014001 | - | |
Trre1g02487 | 492 | Pfam | Helicase conserved C-terminal domain | 315 | 441 | IPR001650 | - | |
Trre1g02487 | 492 | PANTHER | ATP-DEPENDENT RNA HELICASE DBP3 | 47 | 460 | - | - | |
Trre1g02487 | 492 | MobiDBLite | consensus disorder prediction | 22 | 37 | - | - | |
Trre1g02487 | 492 | MobiDBLite | consensus disorder prediction | 42 | 57 | - | - | |
Trre1g02487 | 492 | CDD | SF2_C_DEAD | 302 | 450 | - | - | |
Trre1g02487 | 492 | MobiDBLite | consensus disorder prediction | 1 | 60 | - | - | |
Trre1g02487 | 492 | SMART | helicmild6 | 344 | 441 | IPR001650 | - | |
Trre1g02487 | 492 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 78 | 107 | IPR014014 | GO:0003724 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre1g02487 | Trre-Chr1 | 20145392 | 20151948 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre1g02487 | 79 | 473 | Eukaryotic Initiation Factors Gene Family | AT1G72730 | 35.678 | 3.48e-71 | 230 |