Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02487 ATGGAACAATCTTCTACAACCTCTCCACCACCGCCGACTAAAAGCTGGGCCGATCAAGCAGACGACGAAGATGCCAATCCATCCTCAAGCTCCGCCGCCGAAACCGAAATACCTTCTGTCGATGAATTAACAATCGACGAGGACAAGAAGTCTTCTTCTAAATTATTAGACGATCCCGATGACGCCAACATTCAAGCGGTAACATCTTGTGATACTCCATATACATCGGCGGCGACATTTGAAGAATTGTCACTCTCTCCGGAGCTTTTGAAGGGACTCTATGTAGAGATGAAGTTTCAAAAACCTAGCAAAATTCAAGCTGTGAGTTTGCCTATGATTCTAAATCCTCCACATAGGGATTTGATAGCGCAGGCACATAATGGTTCAGGAAAAACCACTTGTTTTGTGCTTGGGATGCTTAGTCGTGTTGATCCAACCTTGCAAGCTCCTCAAGCTCTTTGCATTTGCCCCACTAGAGAGTTAGCTATTCAGAATGTTGAGGTTCTCCGTAAGATGGGGAAGTACACAGGGATTAGCTCAGAATCTGCAGTTCCTATGGACAAAAGGGATTCAATTCCGATATCAAAAAGGTCGCCTATTATGGCTCAGGTTGTTATTGGAACTCCTGGCACGATTAAGAATTTGATGACTTATAAGAAACTTGGGGTGACAAGATTGAAGATTCTTGTTTTTGATGAGGCCGATCAAATGCTTGCTGAGGATGGATTTAAAGATGATTCTCTGAGGATAATGAAAGAAATAGAAAAGTTCAATTCAAACTGTCAGGTTCTTCTGTTTTCTGCTACGTTTAATGACACTGTCAAGACTTTTGTTACAAGGATTGTTGAGAAGAAGGAACATAATAAACTTTTTGTGAAGAAAGAGGAGCTATCTTTAGATGCGGTGAAGCAGTTCAAAGTTCATGTTCCTGATGAACTTGAGAAGATTGAAGTGATTAAAGATTATATATTTGAAATAGGAGAGAATTTGGGGCAAACTATTATATTTGTGCGCACTAAAAGTAGTGCAAAAATGTTGCATAAAGCTCTTGTTGATTTAGGCTATGAGGTTACTTCGATACACGGTAATCTTGAACATGACGAGAGAGACAAGATTGTCAAGGAGTTTAAAGATGGTTTGACTCAGGTTCTTATATCAACTGATGTTCTTGCCCGTGGCTTTGATCAGCAACAGGTTAATTTGGTTATCAATTATGATCTTCCAATGAAGTACGTTCCCCAGCACCTCCGTGACCGTGACCGTGAATCTGAGCCTGATTTTGAGGTGTATTTGCATAGGGTTGGTAGGGCTGGGCGATTTGGGCGCAAGGGGGCTGTATTTAACCTGATATGTGGTAAATGGGATGAAGCGCTCATGTCAAAGATTGAAAACCATTTTGGCACACATATAAAAGAGGTGAAACGAAAAAGTATCGAAGACTATAAAGCTGCTCTTAAGGATGCTGGTTTACTGTTTTGA 1479 0.4097 MEQSSTTSPPPPTKSWADQADDEDANPSSSSAAETEIPSVDELTIDEDKKSSSKLLDDPDDANIQAVTSCDTPYTSAATFEELSLSPELLKGLYVEMKFQKPSKIQAVSLPMILNPPHRDLIAQAHNGSGKTTCFVLGMLSRVDPTLQAPQALCICPTRELAIQNVEVLRKMGKYTGISSESAVPMDKRDSIPISKRSPIMAQVVIGTPGTIKNLMTYKKLGVTRLKILVFDEADQMLAEDGFKDDSLRIMKEIEKFNSNCQVLLFSATFNDTVKTFVTRIVEKKEHNKLFVKKEELSLDAVKQFKVHVPDELEKIEVIKDYIFEIGENLGQTIIFVRTKSSAKMLHKALVDLGYEVTSIHGNLEHDERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLVINYDLPMKYVPQHLRDRDRESEPDFEVYLHRVGRAGRFGRKGAVFNLICGKWDEALMSKIENHFGTHIKEVKRKSIEDYKAALKDAGLLF 492
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02487 492 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 150 453 IPR027417 -
Trre1g02487 492 Gene3D - 296 482 IPR027417 -
Trre1g02487 492 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 112 288 IPR014001 -
Trre1g02487 492 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 318 489 IPR001650 -
Trre1g02487 492 CDD DEADc_DDX19_DDX25 85 282 - -
Trre1g02487 492 Pfam DEAD/DEAH box helicase 104 276 IPR011545 GO:0003676|GO:0005524
Trre1g02487 492 Gene3D - 57 295 IPR027417 -
Trre1g02487 492 SMART ultradead3 98 305 IPR014001 -
Trre1g02487 492 Pfam Helicase conserved C-terminal domain 315 441 IPR001650 -
Trre1g02487 492 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 47 460 - -
Trre1g02487 492 MobiDBLite consensus disorder prediction 22 37 - -
Trre1g02487 492 MobiDBLite consensus disorder prediction 42 57 - -
Trre1g02487 492 CDD SF2_C_DEAD 302 450 - -
Trre1g02487 492 MobiDBLite consensus disorder prediction 1 60 - -
Trre1g02487 492 SMART helicmild6 344 441 IPR001650 -
Trre1g02487 492 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 78 107 IPR014014 GO:0003724
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Trre1g02487 Trre-Chr1 20145392 20151948 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02487 79 473 Eukaryotic Initiation Factors Gene Family AT1G72730 35.678 3.48e-71 230