Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02484 ATGGCGGATTCTGAGATAGAAACAACAGCTAAACCGGCGTCACTTTACGTCGGCGATCTTCACTCCGATGTAACCGACAATCTTCTGTATAAGGCATTTTCGGAATTCAAGAGCCTCACTTCCGTTCGCGTCTGTAAAGATTCAGTGACTAGAAAATCCCCCTGTTATGGTTACGTCAACTTCACCTCTCATCAAGAAGCAATTCGTGCAATTGAATTGAAGAATCATTCTTTACTCAATGGAAAAGTGATAAGGGTAATGTGGTCAAATCGTGATGCTGATGCAAGGAAAAGTGGCAGAGGGAATGTGTTTGTTAAGAACTTGGCAGAATCTATAGATAATTTGGGACTACATGATTTATTTCAAAAATATGGGAAAATTTTGTCTAGCAAAATTGTCATGTCTGAGGATGGGAAGAGCAAAGGGTATGGTTATATTCAGTTTGATTCAGAGGAGTCTGCAAATGATGCTATCGAGAAAATGAATGGCTCTACTGTGAGAGATAAGCAGATTTATGTTGGGAAATTTATCAGAAAAAGTGAGCGTTCTTTTCCTGACCCAGATGCCAAAGATACAAACTTGTACATTAAGAATTTGGACGCAGATATAACCAAAGAACATCTTGAAGAAAAGTTCTCCTCTTTTGGAAAGATTATTAGCTTGGCTATTGCAAAGGATGGGAATGGGTTGTCAAAAGGCTTTGGATTTGTGAACTATGACAACCCAGATGATGCTAGACGAGCAATGGAAGCAATGAATGGATCAAAATTTGGTTCAAAGAACTTGTATGTTGCAAGGGCACAAAAAAAGGTTGAACGTGAGCAGATATTGCATCGCTTGTTTGTGGAAAAATGCAAGGGATCAAACATTTATGTGAAGAACATTGATGATAGTGTTAGTGATGAAGAACTGCGGAACCAGTTTAGTGCATGTGGCACAATATTGTCTGCAAAAATTATGCGAGATGACAAAGGGATTAGCAAGGGGTTTGGTTTTGTCTGTTTCTCTACCCTGGATGAGGCTGTTAAGTCTGTGAACAGTTTTAATGGGTGCATGTTCCATGGCAAACCACTGTATGTTGCTTTTGCTCAGAAGAAAGAGGTTAGGAAAAGACTATTGCAGCTCAAACATGCTCCGAAACTAGAAGGATTAACTGGACCTTCAACTGCTGTTATCCGTGGTGCACTTCATCCTTTCATCTACCCAGCTACTGGTGTTGTTTATCATCCTTCGCGATCAGAATGGAGTGCTAATGGCTTTGCAGCACCTTCTAAAGCATTTCAACAATCACCAGCTTCTACTATTTCTATCAATGGTAAGCAGCATTGGATAAACATGAGTGGGATGAATGACAATTCGAATTCAAAAGAGTCGAGTACTCATTCAGTACAGGCCAAGCATGTGGCTAGTGGATGCCAACAGGAGATGGAATACAAAGCTGGAATTTCATCTGCTATGCAGGTTCTTGATCTTCAGAAGACCAAAGTTTCTGGCCAGGATGTACTTCATTCAAATTCTATTGCAGCCAAGGTTGCAGTCATTTGA 1545 0.4026 MADSEIETTAKPASLYVGDLHSDVTDNLLYKAFSEFKSLTSVRVCKDSVTRKSPCYGYVNFTSHQEAIRAIELKNHSLLNGKVIRVMWSNRDADARKSGRGNVFVKNLAESIDNLGLHDLFQKYGKILSSKIVMSEDGKSKGYGYIQFDSEESANDAIEKMNGSTVRDKQIYVGKFIRKSERSFPDPDAKDTNLYIKNLDADITKEHLEEKFSSFGKIISLAIAKDGNGLSKGFGFVNYDNPDDARRAMEAMNGSKFGSKNLYVARAQKKVEREQILHRLFVEKCKGSNIYVKNIDDSVSDEELRNQFSACGTILSAKIMRDDKGISKGFGFVCFSTLDEAVKSVNSFNGCMFHGKPLYVAFAQKKEVRKRLLQLKHAPKLEGLTGPSTAVIRGALHPFIYPATGVVYHPSRSEWSANGFAAPSKAFQQSPASTISINGKQHWINMSGMNDNSNSKESSTHSVQAKHVASGCQQEMEYKAGISSAMQVLDLQKTKVSGQDVLHSNSIAAKVAVI 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02484 514 SMART rrm1_1 14 87 IPR000504 GO:0003723
Trre1g02484 514 SMART rrm1_1 289 361 IPR000504 GO:0003723
Trre1g02484 514 SMART rrm1_1 193 265 IPR000504 GO:0003723
Trre1g02484 514 SMART rrm1_1 102 174 IPR000504 GO:0003723
Trre1g02484 514 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 290 358 IPR000504 GO:0003723
Trre1g02484 514 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 194 262 IPR000504 GO:0003723
Trre1g02484 514 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 103 171 IPR000504 GO:0003723
Trre1g02484 514 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 15 85 IPR000504 GO:0003723
Trre1g02484 514 SUPERFAMILY RNA-binding domain, RBD 13 181 IPR035979 GO:0003676
Trre1g02484 514 Gene3D - 2 101 IPR012677 -
Trre1g02484 514 Gene3D - 102 181 IPR012677 -
Trre1g02484 514 FunFam Polyadenylate-binding protein 5 100 - -
Trre1g02484 514 FunFam Polyadenylate-binding protein 102 182 - -
Trre1g02484 514 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 192 269 IPR000504 GO:0003723
Trre1g02484 514 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 13 487 IPR006515 GO:0003723
Trre1g02484 514 Gene3D - 182 284 IPR012677 -
Trre1g02484 514 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 13 91 IPR000504 GO:0003723
Trre1g02484 514 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 101 178 IPR000504 GO:0003723
Trre1g02484 514 Gene3D - 285 372 IPR012677 -
Trre1g02484 514 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 288 365 IPR000504 GO:0003723
Trre1g02484 514 MobiDBLite consensus disorder prediction 449 468 - -
Trre1g02484 514 PANTHER RNA BINDING PROTEIN 288 450 - -
Trre1g02484 514 SMART rrm2_1 102 174 IPR003954 GO:0003676
Trre1g02484 514 SMART rrm2_1 188 265 IPR003954 GO:0003676
Trre1g02484 514 SMART rrm2_1 289 361 IPR003954 GO:0003676
Trre1g02484 514 SUPERFAMILY RNA-binding domain, RBD 287 371 IPR035979 GO:0003676
Trre1g02484 514 FunFam Polyadenylate-binding protein 183 277 - -
Trre1g02484 514 SUPERFAMILY RNA-binding domain, RBD 183 275 IPR035979 GO:0003676
Trre1g02484 514 CDD RRM4_I_PABPs 287 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02484 Trre-Chr1 20129211 20132618 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02484 2 418 Eukaryotic Initiation Factors Gene Family AT2G36660 57.209 1.25e-167 486
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02484 K13126 - gmx:100804671 632.098
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g02484 1 20129211 20132618 Trre1g02484 1 20129211 20132618 ECH
Trre13g04376 13 51383772 51388003 Trre1g02484 1 20129211 20132618 PCT