Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02473 ATGGCTGATAACCGCGAACACGACAACACCGAAAGCAGCGATTTCACCTCCGAAGACGAAGGAACCGAAGATTACCGACGCGGTGGTTACCACGCCGTCCGAATCGGCGACACTTTCAACTCCGGTCGTTATGTCGTTCAGAGCAAGCTCGGTTGGGGTCATTTCTCCACTGTCTGGCTTGCTTGGGATACTCATCATTCTAGATACGTGGCTTTGAAAGTTCAAAAGAGTGCTCAGCATTACACCGAGGCTGCCTTGGATGAGATAACGATATTGCAACAGATTGCGGAGGGAGACACTGATGATAAAAAATGTGTGGTCAAGCTTTTGGACCATTTTAAGCATTCTGGTCCAAATGGACAGCATGTTTGTATGGTTTTTGAATACCTTGGGGATAACCTTTTAACTCTTATTAAGTATAGTGATTATCGTGGAATGCCTATCAACATGGTTAAAGAGATATGCTTTCATATTTTGGTTGGATTGGATTACTTACATAAGCAACTTTCTATCATACACACTGATTTGAAACCCGAAAATATCCTTCTCTTATCAACAATTGATCCGTCTAAGGATCCTAGAAAGTCTGGTGCTCCACTTATTCTTCCTAACAGTAAAGACAAGACTATGCTGGAGTCAACGATTGCAAAAGACACAAAAACATCAAATGGAGATTTGATTAAGAATCATAAGAAAAATATTAAGAGAAAAGCTAAGCAAGCAGCTCATGGATGTGCTGAGAAGGAAGCATCTGAAGGAGCTGATGGTAATCATGATACTTCTGGTGCTGTAGAATCATCTCCGAATGCAAATTCTGCAAGAGAACAAGCTTCTAGTTCTGCTGGCACTAGTAGGTTATCGGATGCTGATGGAACAAAGCTAAAAGAGCAGGGCAACAGAAGAGGAAGCCGCAGTGTGAGACAGAAACTGCTTGCCTCAGTTGATGTCAAGTGCAAGTTAGTTGACTTTGGTAATGCTTGCTGGACATATAAACAGTTTACAAATGATATTCAGACAAGACAATATCGGTGCCCAGAGGTTATCCTTGGATCAAAATATTCTACATCCGCAGATCTTTGGTCGTTTGCTTGCATTTGTTTTGAGCTTGCAACTGGAGACGTGTTATTTGATCCTCATAGCGGTGATAACTTTGATAGGGATGAGGACCACTTGGCATTAATGATGGAACTTCTTGGAATGATGCCACGTAAGATTGCACTAGGGGGGCGTTATTCCCGGGATTTCTTCAATAGGTATGGTGATTTGAGACACATCCGTCGGTTGCGATTCTGGCCGTTGAATAAAGTGCTCATGGAGAAGTACGATTTTAGTGAGAAAGATGCAAGTGACATGAGTGACTTTTTGGTTTCTATCCTTGACTTTGTTCCTGAGAAAAGACCTTCAGCCGGTCAGTGCCTGCTACATCCATGGATGAATGCAGGTCCCCGTCTTTTGGAGCCATCGGTGCCTTCTTCTAATCACAACCCTGCTGGTGAAACTGCTACTTCTGACCAGAAGAATAAGGACAAAGATGAGAGGGAGGCCATGGAGGCTGGAATTGGAAATATCGCCATCAATTCAGATTCTAAACCATTCATGCATTCTCCATCCAAGAAAGCCTTCCAAGGCAGCCACAGGTAG 1641 0.4321 MADNREHDNTESSDFTSEDEGTEDYRRGGYHAVRIGDTFNSGRYVVQSKLGWGHFSTVWLAWDTHHSRYVALKVQKSAQHYTEAALDEITILQQIAEGDTDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGDNLLTLIKYSDYRGMPINMVKEICFHILVGLDYLHKQLSIIHTDLKPENILLLSTIDPSKDPRKSGAPLILPNSKDKTMLESTIAKDTKTSNGDLIKNHKKNIKRKAKQAAHGCAEKEASEGADGNHDTSGAVESSPNANSAREQASSSAGTSRLSDADGTKLKEQGNRRGSRSVRQKLLASVDVKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVILGSKYSTSADLWSFACICFELATGDVLFDPHSGDNFDRDEDHLALMMELLGMMPRKIALGGRYSRDFFNRYGDLRHIRRLRFWPLNKVLMEKYDFSEKDASDMSDFLVSILDFVPEKRPSAGQCLLHPWMNAGPRLLEPSVPSSNHNPAGETATSDQKNKDKDEREAMEAGIGNIAINSDSKPFMHSPSKKAFQGSHR 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02473 546 ProSitePatterns Protein kinases ATP-binding region signature. 50 73 IPR017441 GO:0005524
Trre1g02473 546 PANTHER PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED 8 510 - -
Trre1g02473 546 MobiDBLite consensus disorder prediction 240 255 - -
Trre1g02473 546 MobiDBLite consensus disorder prediction 289 303 - -
Trre1g02473 546 MobiDBLite consensus disorder prediction 484 546 - -
Trre1g02473 546 MobiDBLite consensus disorder prediction 260 287 - -
Trre1g02473 546 Pfam Protein kinase domain 44 184 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g02473 546 Pfam Protein kinase domain 311 478 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g02473 546 Gene3D Transferase(Phosphotransferase) domain 1 127 479 - -
Trre1g02473 546 SMART serkin_6 44 478 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g02473 546 MobiDBLite consensus disorder prediction 486 502 - -
Trre1g02473 546 Gene3D Phosphorylase Kinase; domain 1 20 126 - -
Trre1g02473 546 ProSitePatterns Serine/Threonine protein kinases active-site signature. 171 183 IPR008271 GO:0004672|GO:0006468
Trre1g02473 546 MobiDBLite consensus disorder prediction 1 24 - -
Trre1g02473 546 CDD STKc_SRPK 33 478 - -
Trre1g02473 546 MobiDBLite consensus disorder prediction 237 306 - -
Trre1g02473 546 ProSiteProfiles Protein kinase domain profile. 44 478 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g02473 546 FunFam CMGC/SRPK protein kinase 30 129 - -
Trre1g02473 546 FunFam Serine/threonine-protein kinase SRPK-like protein 308 478 - -
Trre1g02473 546 MobiDBLite consensus disorder prediction 503 517 - -
Trre1g02473 546 SUPERFAMILY Protein kinase-like (PK-like) 39 490 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02473 Trre-Chr1 20045760 20050904 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02473 1 530 EF-hand Containing Proteins AT5G22840 69.476 0.0 763
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Trre1g02473 Pkinase 4.3e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02473 K08832 - gmx:100803070 993.801
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g02473 1 20045760 20050904 Trre1g02473 1 20045760 20050904 ECH