Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02470 ATGATGGAAACCAATGGAATGTTTTCTACCATAACTACTTCTGGTTTGTTAGGTGTTATTGATTCCCCTTTACACCAACAACAGCAACAACAACAACAACAGAATCTTCCTAATCAGCAGCAAAATCCTCATCTTTTGCATCATTCCCAAGTTGTTTCTTATGCTCATGACACTGACACACATCAACAGCAACAGCAGCAACAATTGCATCAATCAATGAAACATGGGTATCCTCCTTTTTCTTCATCCAAGAACAAAATTCAGCAGCAGCAGCAGCAGCAGAGCTCTCAGGTGAGTGATGAAGATGAGCCAAATTTTCCAACTGAAGAAAGTTCTGGTGATCCAAAGAGAAAGATTTCACCTTGGCAAAGAATGAAATGGACTGATACAATGGTAAGGCTTTTGATAATGGCTGTTTATTACATTGGTGATGAAGCTGGTTCTGAAGGGACTGATCCAAATAAGAAAAAGGGTTCTAGTGGTTTGTTACAGAAGAAAGGAAAATGGAAATCTGTTTCAAGGGCTATGATGGAAAAAGGGTTTTATGTGTCACCTCAACAATGTGAGGATAAGTTTAATGATTTGAATAAAAGGTATAAGAGAGTGAATGATATACTTGGAAAAGGAACTGCTTGTAGAGTTGTTGAGAATCAGAATTTGTTGGATACAATGGATTTGACACCAAAGATGAAAGATGAAGTTAGGAAATTGCTTAATTCTAAGCATCTTTTCTTTAGGGAAATGTGTGCTTATCATAATAGTTGTGGTCATGGTGGTGCTGCTGGTGGTTCTGGTTCTAATGTTCATCATCAAGTAGAAGGTGGAACAACAACAACAACAACGACGACAACAACGCCGCCTCAGAATCAACCTCAACATCATCAACAACAGCAGCAGCAGCAGCAGCAGCAACATTGTTTTCATTCAGCAGAGAATGGTGTAGGAAATTTAGGTGGTTCAAGAGGAGAAGGTTTAAGGATGTTGAAAATTGGTAGTGGAGATGTTGAAGAGGAAGATGATGAAGATGAGGATGATGAATCAGAAGACTATTCTGATGAAGATGGAGATGAATCAGGAGAAGGTGTTTCAAAGGGTCGTCAAATAATTAGTCATTTAAATGATCAAGATGAAGAAGAGAATGATCGAAAATCGTCAAGAAAAAGGCCAAGAAAAGGAGGATTTTCATTTTCTATGTCACCATCATTAACATTGATGCATCAAATGAACAATGAAATAAGTGGTGTGTTTCAAGATGGAGGTAAGAGTCCATGGGAGAAAAAACAATGGATAAGAAATAGGATATTGCAATTGGAAGAACAGAAAATAAGGTATGAATCACAAGCTTTTGAACTTGAAAAACAAAGGTTGAAATGGCAAAGGTATAGTAGTAAGAAAGAGAGGGAAATGGAAAGAGCTAAACTTGAGAATGAAAGGAAAAGATTAGAAAATGAGAGAATGGTTTTACTTATTAGGAAGAAGGAAATTGAATTGATGAATCTTCAACAACAACAGCAGCAACAACAACACTCTTCTACCTAG 1539 0.3723 MMETNGMFSTITTSGLLGVIDSPLHQQQQQQQQQNLPNQQQNPHLLHHSQVVSYAHDTDTHQQQQQQQLHQSMKHGYPPFSSSKNKIQQQQQQQSSQVSDEDEPNFPTEESSGDPKRKISPWQRMKWTDTMVRLLIMAVYYIGDEAGSEGTDPNKKKGSSGLLQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGKGTACRVVENQNLLDTMDLTPKMKDEVRKLLNSKHLFFREMCAYHNSCGHGGAAGGSGSNVHHQVEGGTTTTTTTTTTPPQNQPQHHQQQQQQQQQQHCFHSAENGVGNLGGSRGEGLRMLKIGSGDVEEEDDEDEDDESEDYSDEDGDESGEGVSKGRQIISHLNDQDEEENDRKSSRKRPRKGGFSFSMSPSLTLMHQMNNEISGVFQDGGKSPWEKKQWIRNRILQLEEQKIRYESQAFELEKQRLKWQRYSSKKEREMERAKLENERKRLENERMVLLIRKKEIELMNLQQQQQQQQHSST 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02470 512 PANTHER F16F4.11 PROTEIN-RELATED 7 501 - -
Trre1g02470 512 MobiDBLite consensus disorder prediction 334 356 - -
Trre1g02470 512 MobiDBLite consensus disorder prediction 146 165 - -
Trre1g02470 512 Gene3D - 127 201 - -
Trre1g02470 512 Coils Coil 462 510 - -
Trre1g02470 512 Pfam Myb/SANT-like DNA-binding domain 124 250 IPR044822 -
Trre1g02470 512 Coils Coil 434 454 - -
Trre1g02470 512 MobiDBLite consensus disorder prediction 54 102 - -
Trre1g02470 512 MobiDBLite consensus disorder prediction 261 399 - -
Trre1g02470 512 MobiDBLite consensus disorder prediction 269 310 - -
Trre1g02470 512 MobiDBLite consensus disorder prediction 370 386 - -
Trre1g02470 512 MobiDBLite consensus disorder prediction 54 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02470 Trre-Chr1 20003892 20005430 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Trre1g02470 Myb_DNA-bind_4 8.2e-22 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02470 - - tpra:123902711 744.962
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g02470 1 20003892 20005430 Trre1g02470 1 20003892 20005430 ECH
Trre13g04398 13 51556324 51557691 Trre1g02470 1 20003892 20005430 PCT