Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02467 ATGGCTTCTTGCGACGACGATGACGATTTCTCAATCCTCCGTGACGATAGCCACCACTCTCACCATCTTCACCAAACCTTCGCACCACATCACCACCACCACAACCACCACACTCACCACCATTTCTCCACCGCTTCTGTCCATTCCAAACCCGTCGCCGACGACGACACCGACGATTACGGAAATCCGTTCGATGATGACGCCGGAAGCGAGAAACGTAAGGATCGAGACGAGATCGGAGACGGAACGACGTCGTACGCGTTTAACAAGAGACCAAAACCTGTTTCTAGCGGTAGCGGTGGAGTTGGAGGAGTAGGAGCAGAGTATCGGAAGGATCGCGAAGAATGGAGTGATACAGCGATTGTTTGTTTGTTGGAAGCGTATACTGAGAAGTTTGCGCAGCTGAATCGGGGAAATCTGAGAGGAAGAGATTGGGAAGAGGTAGCATCGGTGGTGAGTGAACGGTGTGAGAATCAATCGAAGAGTGTTGAACAGTGTAAGAACAAGGTTGATAATCTGAAGAAAAGGTATAAGCTAGAGAGGCATAGAATGAACAATGGATGCATCTCTAATAGTCATTGGCCTTGGTATAAGCAGATGGAACACATCGTCGGAAATTCTCTTCCTTCTAAGTTCGCCGACGACGATAAAGCCATTGTTCCTGCTTCCATTTCACCTAGACAATCCAAGAGATATGGAGTGGCAACATCCAGCAGTGGAGGTCAAGTAAACAGCCTGAAGTCTAAAGCACTGCCCAACCTTAGATGGCGGAGAGTTGTTCTGAAAATTAGTGGGTCAGCACTTACCGGATCAGATACCTGCAATATTGACCCTAAGGTGGCCATGTTAGTTTCAAGTGAAGTTGCAATCGCTTCCCGCCTTGGTGTGGAGGTAGCAATTGTTGTTGGAGGTCGTAATTTCTTCTGTGGAGATGCATGGGTGACTGCAACAGGTTTAGAAAGATGTACTGCATACCAAGTTGGCATGATGGCAACTGTGATGAACTCATTACTGCTCCAATCAACTCTAGAGAAGATGGGTGTTCAGACTCGTGTACAAACTTCAGTTTCAATGCAGGAGTTTGCTGAACCATACAATAGGCAGCGGGCCATCAGGCATCTTGAGAAAGGAAGAGTTGTTATATTTGGTGGCATTGGTTTTGGTGCTGGCAATCCACTTTTCTCAACCGACATAGGTGCTGCTCTTCGAGCATCCGAGGTTAATGCTCAGGCTGTCATCAAAGGTACTAATGTAGATGGTATATATGACTGCAACTCCCGAGACACCAATTTTACTTTCGAGCACATATCTTTCAGGGAGCTAGTGTCTAGAGGTGTCACCTCTATGGATATGCAAGCCCTGACATTCTGTGAGGAAAATGCCATTCCTGTTGTAGTTTTTAATCTATTGGCACCTGGGAACATCTCAAAAGCTTTGTGTGGAGAACAAGTTGGCACACTAATTGACCAAACTGGAGCAATAAGCTAA 1488 0.4657 MASCDDDDDFSILRDDSHHSHHLHQTFAPHHHHHNHHTHHHFSTASVHSKPVADDDTDDYGNPFDDDAGSEKRKDRDEIGDGTTSYAFNKRPKPVSSGSGGVGGVGAEYRKDREEWSDTAIVCLLEAYTEKFAQLNRGNLRGRDWEEVASVVSERCENQSKSVEQCKNKVDNLKKRYKLERHRMNNGCISNSHWPWYKQMEHIVGNSLPSKFADDDKAIVPASISPRQSKRYGVATSSSGGQVNSLKSKALPNLRWRRVVLKISGSALTGSDTCNIDPKVAMLVSSEVAIASRLGVEVAIVVGGRNFFCGDAWVTATGLERCTAYQVGMMATVMNSLLLQSTLEKMGVQTRVQTSVSMQEFAEPYNRQRAIRHLEKGRVVIFGGIGFGAGNPLFSTDIGAALRASEVNAQAVIKGTNVDGIYDCNSRDTNFTFEHISFRELVSRGVTSMDMQALTFCEENAIPVVVFNLLAPGNISKALCGEQVGTLIDQTGAIS 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02467 495 MobiDBLite consensus disorder prediction 65 81 - -
Trre1g02467 495 SUPERFAMILY Carbamate kinase-like 255 488 IPR036393 -
Trre1g02467 495 Coils Coil 156 183 - -
Trre1g02467 495 Pfam Myb/SANT-like DNA-binding domain 113 203 IPR044822 -
Trre1g02467 495 Pfam Amino acid kinase family 258 468 IPR001048 -
Trre1g02467 495 FunFam Uridylate kinase isoform A 248 494 - -
Trre1g02467 495 PANTHER URIDYLATE KINASE 109 494 - -
Trre1g02467 495 MobiDBLite consensus disorder prediction 29 106 - -
Trre1g02467 495 CDD AAK_UMPK-PyrH-Ec 257 489 IPR015963 GO:0005737|GO:0006221|GO:0033862
Trre1g02467 495 MobiDBLite consensus disorder prediction 29 44 - -
Trre1g02467 495 Gene3D - 251 489 IPR036393 -
Trre1g02467 495 FunFam Aspartate/glutamate/uridylate kinase family protein 116 179 - -
Trre1g02467 495 Gene3D - 116 179 - -
Trre1g02467 495 Hamap Uridylate kinase [pyrH]. 254 489 IPR015963 GO:0005737|GO:0006221|GO:0033862
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02467 Trre-Chr1 19975057 19979289 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02467 94 207 Trihelix Transcription Factor Family AT3G14180 34.146 3.44e-16 79.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Trre1g02467 AA_kinase 1.9e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02467 - - gmx:100805176 782.711