Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02466 ATGTTCTTCTTCTTCTTCCTCTTCTTAGGCACCTACATTGTACCGTGTCTAACTTATAATGACACTCATGCACTTACTCTCTTCCGCCAACAAACAGACATACATGGCCAACTTCTCACTAACTGGACCGGAACAGACGCATGCTCGGCCACATGGCATGGTGTCATTTGCTCCCCAAACAATCGTGTCACGTCCATCACACTTCCGTCCCTCAACCTCCGAGGACCCATTGACGCCCTCTCTCCCCTCACCCATCTCCGCCTCCTCGACCTACATAACAACCGCCTAAATGGCACTGTTTCACCCTCTCTACTCTCCAACTGCACAAATCTTAAACTTCTCTATCTTGCCGGAAACGACTTTTCTGGTCAAATCTCACCTGATATCTCCTCCCTGGTTAATCTCCTTCGTCTTGACCTCTCCGACAACAACCTTGCTGGTGCAATTCCCAATGAAATTTCCCGTTTAACTAGCCTCCTCACACTGAGGCTTCAGAACAATGCACTCTCCGGTAACATCCCCGACCTCTCCTCTGCCATGCCGAATCTCACAGAGCTCAACATGACAAACAACGAATTCCATGGTCATATACCAAACTCTATGGTTAAAAAATTCGGTGATGAAAGCTTCTCTGGTAATGAAGGTTTATGCGGTTCAAAACCGTTCCAAGTTTGTTCCTCCACAGAGAACAATCCTCCTTTCTCTGAACCGGTTCAAACCGTTCCTTCAAACCCAAGTTCATTCCCTCAAACAAGTATAGTCGCAAGACCAAGAAGCCAACACCGTAAAGGGTTAAGCCCCGGCACAATTGTAGCAATCGTGGTGGCAATTTGTGTTGCATTGTTAGTGGTAACATCTTTCGTTGTTGCTCAATGTTGTGCCAGAGGGAAAGGTGTTAATAGTAATTCCATAATGGGCAGTGAGGGTGGAAATGGAAAGAGGAAGAGTTATGGTAGTGAAAAGAAGGTGTATAATGCAAATGGTCGAGCTAGTGATAGTAGTGATGGGACTAGTGGAACTGATATGAGCAAGCTTGTGTTTTTTGATAGGAGGAATGGGTTTGAATTGGAGGATTTGTTGCGTGCTTCTGCTGAGATGCTTGGAAAGGGTAGTTTGGGAACTGTTTATAGAGCAGTGCTTGATGATGGTAGTACAGTTGCTGTTAAGAGGTTAAAAGATGCAAATCCCTGTGCTAGGCATGAGTTTGAGCAGTATATGGATGTGATTGGGAAGCTTAAACACCCGAACATTGTTAGACTTAGAGCTTATTATTATGCTAAGGAAGAAAAGCTTCTTGTATATGATTATCTCTCCAATGGAAGTTTACATTCTCTTCTTCATGGGAACCGTGGACCTGGGAGGATTCCATTGGATTGGACAACAAGAATAAGCTTGGTGTTAGGAGCAGCAAGAGGGCTAGCTAGGATTCATACAGAGTACAGTGCAGCAAAAGTGCCACATGGGAATGTCAAATCATCCAATGTACTACTTGACAAGAATGGTGTTGCTTGCATATCTGACTTTGGTTTGTCACTACTATTAAACCCTGTTCATGCAATTGCTAGGTTGGGAGGGTACAGAGCACCTGAACAGACAGAACAAAAGAAACTGTCTCAGCAAGCTGATGTGTACAGTTTCGGTGTGTTGCTATTGGAAGTTCTCACAGGGAGAGCTCCTTCATTACAGTATCCTTCCCCAGGGACAGCTCGTCCTCGTAAAGATGAAGAAGAACAAACTATGGTCGATCTTCCCAAATGGGTTCGATCAGTTGTGAGAGAAGAGTGGACTGGAGAGGTTTTTGATCAAGAACTTCTGCGATACAAGAATATCGAGGAAGAGCTTGTGTCAATGCTGCATGTTGGGTTGGCTTGTGTGGTACAGCAGCCAGAGAAGAGGCCAACTATGGTAGATGTTGTTAAGATGATTGAGGATATCAGGGTGGAGCAATCTCCTTTGTGCGAGGACTATGATGAATCACGCAATTCACTTTCGCCTTCCATTCCCACCACTGAAGATGGTCTTGCTTAG 2028 0.4492 MFFFFFLFLGTYIVPCLTYNDTHALTLFRQQTDIHGQLLTNWTGTDACSATWHGVICSPNNRVTSITLPSLNLRGPIDALSPLTHLRLLDLHNNRLNGTVSPSLLSNCTNLKLLYLAGNDFSGQISPDISSLVNLLRLDLSDNNLAGAIPNEISRLTSLLTLRLQNNALSGNIPDLSSAMPNLTELNMTNNEFHGHIPNSMVKKFGDESFSGNEGLCGSKPFQVCSSTENNPPFSEPVQTVPSNPSSFPQTSIVARPRSQHRKGLSPGTIVAIVVAICVALLVVTSFVVAQCCARGKGVNSNSIMGSEGGNGKRKSYGSEKKVYNANGRASDSSDGTSGTDMSKLVFFDRRNGFELEDLLRASAEMLGKGSLGTVYRAVLDDGSTVAVKRLKDANPCARHEFEQYMDVIGKLKHPNIVRLRAYYYAKEEKLLVYDYLSNGSLHSLLHGNRGPGRIPLDWTTRISLVLGAARGLARIHTEYSAAKVPHGNVKSSNVLLDKNGVACISDFGLSLLLNPVHAIARLGGYRAPEQTEQKKLSQQADVYSFGVLLLEVLTGRAPSLQYPSPGTARPRKDEEEQTMVDLPKWVRSVVREEWTGEVFDQELLRYKNIEEELVSMLHVGLACVVQQPEKRPTMVDVVKMIEDIRVEQSPLCEDYDESRNSLSPSIPTTEDGLA 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02466 675 SUPERFAMILY Protein kinase-like (PK-like) 365 642 IPR011009 -
Trre1g02466 675 ProSiteProfiles Protein kinase domain profile. 361 647 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g02466 675 Gene3D Phosphorylase Kinase; domain 1 335 436 - -
Trre1g02466 675 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 4 647 IPR046959 -
Trre1g02466 675 SMART LRR_typ_2 132 156 IPR003591 -
Trre1g02466 675 SMART LRR_typ_2 180 204 IPR003591 -
Trre1g02466 675 SMART LRR_typ_2 83 107 IPR003591 -
Trre1g02466 675 MobiDBLite consensus disorder prediction 230 261 - -
Trre1g02466 675 SUPERFAMILY L domain-like 18 202 - -
Trre1g02466 675 FunFam Leucine-rich repeat receptor-like kinase 20 131 - -
Trre1g02466 675 Pfam Leucine rich repeat N-terminal domain 20 58 IPR013210 -
Trre1g02466 675 MobiDBLite consensus disorder prediction 653 675 - -
Trre1g02466 675 MobiDBLite consensus disorder prediction 230 257 - -
Trre1g02466 675 Gene3D Transferase(Phosphotransferase) domain 1 437 663 - -
Trre1g02466 675 CDD STKc_IRAK 367 645 - -
Trre1g02466 675 FunFam Leucine-rich repeat receptor-like protein kinase 134 227 - -
Trre1g02466 675 FunFam pollen receptor-like kinase 1 331 436 - -
Trre1g02466 675 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 437 654 - -
Trre1g02466 675 Pfam Protein kinase domain 365 640 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g02466 675 Gene3D Ribonuclease Inhibitor 16 206 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02466 Trre-Chr1 19971460 19973917 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02466 17 671 Receptor kinase-like Gene Family AT2G36570 66.716 0.0 866
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Trre1g02466 Pkinase 2.1e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02466 - - gmx:102660494 968.378