Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02465 ATGATGAATTGTGCCATCATGTTCTTCTTCTTCTTCCTCTTCTTAGGCACCTACATTGTACCGTGTCTAACTTATAATGACACTCATGCACTTACTCTCTTCCGCCAACAAACAGACATACATGGCCAACTTCTCACTAACTGGACCGGAACAGACGCATGCTCGGCCACATGGCATGGTGTCATTTGCTCCCCAAACAATCGTGTCACGTCCATCACACTTCCGTCCCTCAACCTCCGAGGACCCATTGACGCCCTCTCTCCCCTCACCCATCTCCGCCTCCTCGACCTACATAACAACCGCCTAAATGGCACTGTTTCACCCTCTCTACTCTCCAACTGCACAAATCTTAAACTTCTCTATCTTGCCGGAAACGACTTTTCTGGTCAAATCTCACCTGATATCTCCTCCCTGGTTAATCTCCTTCGTCTTGACCTCTCCGACAACAACCTTGCTGGTGCAATTCCCAATGAAATTTCCCGTTTAACTAGCCTCCTCACACTGAGGCTTCAGAACAATGCACTCTCCGGTAACATCCCCGACCTCTCCTCTGCCATGCCGAATCTCACAGAGCTCAACATGACAAACAACGAATTCCATGGTCATATACCAAACTCTATGGTTAAAAAATTCGGTGATGAAAGCTTCTCTGGTAATGAAGGTTTATGCGGTTCAAAACCGTTCCAAGTTTGTTCCTCCACAGAGAACAATCCTCCTTTCTCTGAACCGGTTCAAACCGTTCCTTCAAACCCAAGTTCATTCCCTCAAACAAGTATAGTCGCAAGACCAAGAAGCCAACACCGTAAAGGGTTAAGCCCCGGCACAATTGTAGCAATCGTGGTGGCAATTTGTGTTGCATTGTTAGTGGTAACATCTTTCGTTGTTGCTCAATGTTGTGCCAGAGGGAAAGGTGTTAATAGTAATTCCATAATGGGCAGTGAGGGTGGAAATGGAAAGAGGAAGAGTTATGGTAGTGAAAAGAAGGTGTATAATGCAAATGGTCGAGCTAGTGATAGTAGTGATGGGACTAGTGGAACTGATATGAGCAAGCTTGTGTTTTTTGATAGGAGGAATGGGTTTGAATTGGAGGATTTGTTGCGTGCTTCTGCTGAGATGCTTGGAAAGGGTAGTTTGGGAACTGTTTATAGAGCAGTGCTTGATGATGGTAGTACAGTTGCTGTTAAGAGGTTAAAAGATGCAAATCCCTGTGCTAGGCATGAGTTTGAGCAGTATATGGATGTGATTGGGAAGCTTAAACACCCGAACATTGTTAGACTTAGAGCTTATTATTATGCTAAGGAAGAAAAGCTTCTTGTATATGATTATCTCTCCAATGGAAGTTTACATTCTCTTCTTCATGGGAACCGTGGACCTGGGAGGATTCCATTGGATTGGACAACAAGAATAAGCTTGGTGTTAGGAGCAGCAAGAGGGCTAGCTAGGATTCATACAGAGTACAGTGCAGCAAAAGTGCCACATGGGAATGTCAAATCATCCAATGTACTACTTGACAAGAATGGTGTTGCTTGCATATCTGACTTTGGTTTGTCACTACTATTAAACCCTGTTCATGCAATTGCTAGGTTGGGAGGGTACAGAGCACCTGAACAGACAGAACAAAAGAAACTGTCTCAGCAAGCTGATGTGTACAGTTTCGGTGTGTTGCTATTGGAAGTTCTCACAGGGAGAGCTCCTTCATTACAGTATCCTTCCCCAGGGACAGCTCGTCCTCGTAAAGATGAAGAAGAACAAACTATGGTCGATCTTCCCAAATGGGTTCGATCAGTTGTGAGAGAAGAGTGGACTGGAGAGGTTTTTGATCAAGAACTTCTGCGATACAAGAATATCGAGGAAGAGCTTGTGTCAATGCTGCATGTTGGGTTGGCTTGTGTGGTACAGCAGCCAGAGAAGAGGCCAACTATGGTAGATGTTGTTAAGATGATTGAGGATATCAGGGTGGAGCAATCTCCTTTGTGCGAGGACTATGATGAATCACGCAATTCACTTTCGCCTTCCATTCCCACCACTGAAGATGGTCTTGCTTAG 2046 0.4487 MMNCAIMFFFFFLFLGTYIVPCLTYNDTHALTLFRQQTDIHGQLLTNWTGTDACSATWHGVICSPNNRVTSITLPSLNLRGPIDALSPLTHLRLLDLHNNRLNGTVSPSLLSNCTNLKLLYLAGNDFSGQISPDISSLVNLLRLDLSDNNLAGAIPNEISRLTSLLTLRLQNNALSGNIPDLSSAMPNLTELNMTNNEFHGHIPNSMVKKFGDESFSGNEGLCGSKPFQVCSSTENNPPFSEPVQTVPSNPSSFPQTSIVARPRSQHRKGLSPGTIVAIVVAICVALLVVTSFVVAQCCARGKGVNSNSIMGSEGGNGKRKSYGSEKKVYNANGRASDSSDGTSGTDMSKLVFFDRRNGFELEDLLRASAEMLGKGSLGTVYRAVLDDGSTVAVKRLKDANPCARHEFEQYMDVIGKLKHPNIVRLRAYYYAKEEKLLVYDYLSNGSLHSLLHGNRGPGRIPLDWTTRISLVLGAARGLARIHTEYSAAKVPHGNVKSSNVLLDKNGVACISDFGLSLLLNPVHAIARLGGYRAPEQTEQKKLSQQADVYSFGVLLLEVLTGRAPSLQYPSPGTARPRKDEEEQTMVDLPKWVRSVVREEWTGEVFDQELLRYKNIEEELVSMLHVGLACVVQQPEKRPTMVDVVKMIEDIRVEQSPLCEDYDESRNSLSPSIPTTEDGLA 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02465 681 SUPERFAMILY L domain-like 24 208 - -
Trre1g02465 681 FunFam pollen receptor-like kinase 1 337 442 - -
Trre1g02465 681 Gene3D Transferase(Phosphotransferase) domain 1 443 669 - -
Trre1g02465 681 ProSiteProfiles Protein kinase domain profile. 367 653 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g02465 681 MobiDBLite consensus disorder prediction 236 267 - -
Trre1g02465 681 FunFam Leucine-rich repeat receptor-like kinase 26 137 - -
Trre1g02465 681 MobiDBLite consensus disorder prediction 236 263 - -
Trre1g02465 681 SUPERFAMILY Protein kinase-like (PK-like) 371 648 IPR011009 -
Trre1g02465 681 Gene3D Ribonuclease Inhibitor 22 212 IPR032675 -
Trre1g02465 681 CDD STKc_IRAK 373 651 - -
Trre1g02465 681 SMART LRR_typ_2 89 113 IPR003591 -
Trre1g02465 681 SMART LRR_typ_2 138 162 IPR003591 -
Trre1g02465 681 SMART LRR_typ_2 186 210 IPR003591 -
Trre1g02465 681 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 443 660 - -
Trre1g02465 681 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 10 653 IPR046959 -
Trre1g02465 681 FunFam Leucine-rich repeat receptor-like protein kinase 140 233 - -
Trre1g02465 681 Pfam Protein kinase domain 371 646 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g02465 681 Pfam Leucine rich repeat N-terminal domain 26 64 IPR013210 -
Trre1g02465 681 MobiDBLite consensus disorder prediction 659 681 - -
Trre1g02465 681 Gene3D Phosphorylase Kinase; domain 1 341 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02465 Trre-Chr1 19971442 19973917 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02465 23 677 Receptor kinase-like Gene Family AT2G36570 66.716 0.0 867
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Trre1g02465 Pkinase 2.2e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02465 - - gmx:102660494 968.378