Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02464 ATGAGAGTGCACTGCATCAAGTTGCAGTATAATCCACCACCAAGAACCTCATCCTCAATATTAACACTGCAGCTAAAGAAAAACATGGCGTGCATGTGGCGCAAGAATGCCTTCAGCGGCAAGAAACTTCCCTCAGACGTGCCGCGAGGTCACTTGGCCGTGATAGTAGGAGAGGCAAACAGGAGGTTTGTCATAAGAGCTGACTACCTGAACCATCCAGTGCTTCAACAACTGCTTGATCAAGCATATGAAGGATATGGCTTCAACAAGAGTGGTCCTCTGGCTATACCTTGTGATGAGTTCTTATTTGAAGACATTCTTCATTCCCTTGGTGGAGGAACTCACACTCGTCGATCCTCTTCCTCTGTGCTTACAAAAAAGCTAGATTTGAGCTTTTCCAAAGACTCTGAACCATTACTTGAAGTCTTTGACAGCAAAAGGGGCAACAACTACAATCATTAA 462 0.4481 MRVHCIKLQYNPPPRTSSSILTLQLKKNMACMWRKNAFSGKKLPSDVPRGHLAVIVGEANRRFVIRADYLNHPVLQQLLDQAYEGYGFNKSGPLAIPCDEFLFEDILHSLGGGTHTRRSSSSVLTKKLDLSFSKDSEPLLEVFDSKRGNNYNH 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02464 153 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 34 106 IPR003676 GO:0009733
Trre1g02464 153 Pfam Auxin responsive protein 37 110 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02464 Trre-Chr1 19951598 19952059 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02464 27 122 Calmodulin-binding Proteins AT4G34750 51.515 3.65e-26 95.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02464 K14488 - gmx:100777611 178.333
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g02464 1 19951598 19952059 Trre1g02464 1 19951598 19952059 ECH