Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02457 ATGGAAGAAGAAACTTTCCAAAACAACAACAACAACAACAACAACAATGTTTCTTCTACAGAATCACCTCAACAACAACTAGTTTCAAACTCATTTCCTCAAGTAATGAACATGAACATGAACATTGACTCAACAAGTCTTGTCAACACTGTTGTTCCTCCAGTAACATCAATGGTTCCTCCAGTAACATCAACAGTCACAACAACAACAACAACACCAACAGGAAACAGTGGAAGTTTAGATTTGTTTGGTAAAAAGAAAAGAGGTAGACCAAGAAAATATGATGCAGATGGAAACCTAAATCCAAGTTACAAGAAAGAAAAACCACCAACATTAACATCTCCAACATCACCACCACCAGGATTCACTTTGTCTACAAATGACTTTTCCTCCAAAAAGGGTCGTGGCAAACCAACTTCCTTTGGAAATTACCAAATCCTTTCTTCTTTTGGTGAAGTGTTTTCAAGCACAGCTGCTGTGGATTTTACACCGCATGTGGTCACAGTTTATACAGGAGAGGATGTTGGTGGAAAGATCTTGTCATTTGCACAGAAGAGTCCAAGAGGAGGAATATGCATTCTTTCTGCCAATGGTGCTATCTCTAAAGTTGCATTACGTCAACTTGGTTCTTCTGGTGGTGACATTTTGACTTATGAGGGTCGGTTTGAGATTTTATCTTTGTCTGGATCATACACTGTCTCTGACAATAGTGGCATGAGAACTCGAGAGGGTGGATTGAGTGTCTCACTAGCTGGTCCTGATGGTCGAGTCATCGGAGGTGCTGTTGCTGGTCTTCTTACAGCTGCTGGCCCCATCCAAATTATAGTGGGGAGCTTCATGACAAATGGACATGGTTACAACAAGACCCTTAAAAAGAAATACCAACGCGAACAAATAGCGGTCTCTCCAACTGGTCCAGAAGCAGCGATAGCAGCAAGACCTATCTCACAAGCAAATACTCATGGCGAAAACTTTATGATACCTATTATGTCTCATCAGTTACAAGATCAAATCCAGAGAGAATGTGCTAGTGTTTCAACTGATCCTGATGCTGCTAATTGGAATGGTTCCGATGAATTTTCCGATCAAAGGACATCCCCTGACATCAATATTTCTTTGGCTGATGAATAG 1131 0.4085 MEEETFQNNNNNNNNNVSSTESPQQQLVSNSFPQVMNMNMNIDSTSLVNTVVPPVTSMVPPVTSTVTTTTTTPTGNSGSLDLFGKKKRGRPRKYDADGNLNPSYKKEKPPTLTSPTSPPPGFTLSTNDFSSKKGRGKPTSFGNYQILSSFGEVFSSTAAVDFTPHVVTVYTGEDVGGKILSFAQKSPRGGICILSANGAISKVALRQLGSSGGDILTYEGRFEILSLSGSYTVSDNSGMRTREGGLSVSLAGPDGRVIGGAVAGLLTAAGPIQIIVGSFMTNGHGYNKTLKKKYQREQIAVSPTGPEAAIAARPISQANTHGENFMIPIMSHQLQDQIQRECASVSTDPDAANWNGSDEFSDQRTSPDINISLADE 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02457 376 Pfam Plants and Prokaryotes Conserved (PCC) domain 164 279 IPR005175 -
Trre1g02457 376 MobiDBLite consensus disorder prediction 346 376 - -
Trre1g02457 376 MobiDBLite consensus disorder prediction 58 79 - -
Trre1g02457 376 MobiDBLite consensus disorder prediction 58 136 - -
Trre1g02457 376 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 49 341 IPR039605 GO:0003680
Trre1g02457 376 ProSiteProfiles PPC domain profile profile. 159 307 IPR005175 -
Trre1g02457 376 SUPERFAMILY AF0104/ALDC/Ptd012-like 161 281 - -
Trre1g02457 376 Gene3D - 164 303 - -
Trre1g02457 376 MobiDBLite consensus disorder prediction 1 26 - -
Trre1g02457 376 MobiDBLite consensus disorder prediction 346 370 - -
Trre1g02457 376 MobiDBLite consensus disorder prediction 83 102 - -
Trre1g02457 376 MobiDBLite consensus disorder prediction 118 136 - -
Trre1g02457 376 CDD DUF296 163 279 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02457 Trre-Chr1 19898761 19902232 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02457 85 321 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 48.770 3.91e-60 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02457 - - gmx:100779227 389.423
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g02457 1 19898761 19902232 Trre1g02457 1 19898761 19902232 ECH