Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02445 ATGGAAATGCCTGCTAGAAGATCTAATTACTCACTTCTAAGTCAAGTTCCCGACGATCAATTTTCATACGCCGCCGGAGCTAGTGCTCCGTCGTCATCCAGCGACGGAAAAGCTAGTAGAGGCGGGAAATTAGATAGAGGTTTTGATTGGGAGTTAGTCGGCGATCATAGGTCGACTCAACAAGGGAACAATCGGATCGGAAATTTGTACTCGTCGATCGGGTTACAGAGACAGTCAAGCGGAAGTAGCTACGGTGAAAGTTCGTTGTCAGGTGGTGGTGAATATTATGCTCAGACGTTGTCTACGGCGGCGGCTAGTGAGGTTGATGCGTTTGGATATTTGCATGATGATGGATTTAAGGTTGGTGAGGTGAGAAGTAAGTTATCTGAAGGTCTGCCGTGGACGGGGGGATCGTCTGGGAAGAGCTGGGCTCAGCAGACGGAGGAGAGTTATCAGTTGCAGCTGGCTTTGGCGTTGCGGCTTTCGTCGGATGCTACTTGTGCTGATGATCCGAATTTTCTGGATCCGGTGCCGGATGAAGCAGCTTCGAGGATATCGTCTTCGCCTGAGGCCATTTCTCATAGATTTTGGGTGAATGGCTGCCTATCATACTCCGACAAAATTCCTGATGGCTTTTACCTAATTCATGGGATGGATTCCTATGTCTGGACTGTCTGCACTGATCTGCAGGAAAACAGCCGAATCCCATCAGTTGATAGTCTAAAGTCTGTACATCCCCGCATTGATTCTTCCCTTGAAGTAGTTTTGGTCGATCGACGCAGCGATGCCAGCTTGAGAGAACTGCAAAACATGGTTCATAACATTTCTTGTAGCAGCATAACAACAACAGAGGTTGTGGATCAGCTGTCCAAGCTGGTTTGCAACTGTATGGGGGGTTCAGCTTCTGCTGGGGAGGATGAGCTTCTTTCTTTCTGGAGGGATTGCAGTAATAATCTGAAAGATTGCTTAGGATCTGTTGTTTTCCCCATAGGTAGTCTATCTGTTGGCCTTTGCAGGCACCGTGCAATATTATTCAAAGTACTAGCTGATGCCATTGATTTACCATGTCGAATTGCAAAGGGCTGTAAATATTGCAAACGAGATGATGCTTCTTCTTGTCTTGTTCGATTTGGGCTTGAGAGGGAATATCTAGTTGATTTAATTGGGAAGCCAGGACAATTATGCGAGCCTGATTCCTTGCTCAACGGGCCAGCTTCCATCTCATTTTGTTCACCTTTGCGCTTTCCAAGACTTAAACCAGCTGAAACTGCAATTGATTTCAGGACACTCGCCAAACAGTATTTCTCAGACTGTCTGTCTCTTGAGCTTTTCTTCGACAACAGTTCTGCAGAACAGTTCGATGCGAAATGCAGTGAAAGGAGTAACGTTAGGCCGATTACAACTGACAGTAACAGAAGCTTGTATCCACAAGTTTCTCTTCTGAATACTCATGATCAAGCTTCTGAAACATATATGTTATGTAACCCCCCTCAGAACATTACAGACTCAACAACTGTTGGCAAATATCCACCCCCTTTAAAGAATAAGCGTCCTGTTGCTATTGCCAATGATGAAGTCATTGAGGGTAGGAGGTTTATTGAAGCAAGTCAACTGCTTCCTAGCAAGCCTAGTCGAGATGTTGCCTTTGATATGGAGGATTTGGCCATACCATGGAACGATCTTGTTTTAAAAGAAAAAATAGGATCAGGTTCTTTTGGAACTGTACATCGTGCTGAGTGGAATGGCTCGGATGTTGCTGTGAAAATTTTGATGGAGCAAGATTTTCATGCTGAACGCTTCAAGGAATTCATGCGGGAGGTTGCAATAATGAAACATTTGCGGCATCCAAACATTGTTTTATTAATGGGGGCAGTCACACAACCTCCTAACTTATCAATTGTCACCGAATATTTATCAAGGGGTAGCTTATATAGGCTGTTGCATAGACCTGGTGCCAAGGAAGTGTTAGATGAGAGGCGTAGGCTTAGTATGGCTTACGATGTGGCAAAGGGAATGAATTATCTTCACAAGCGTAACCCCCCCATTGTTCATAGAGATCTGAAATCTCCAAACCTTCTTGTTGACAAGAAATACACAGTGAAGGTTTGTGATTTTGGGCTTTCCCGCTTAAAGGCCAATACATTTCTCTCTTCCAAGTCAGCTGCTGGGACTCCTGAGTGGATGGCTCCAGAAGTTCTTCGAGACGAGCCATCAAATGAGAAGTCTGATATTTACAGCTTTGGTGTAATCATGTGGGAGCTTGCAACATTGCAACAGCCGTGGGGTAATTTGAATCCGGCACAGGTTGTTGCTGCTGTTGGCTTCAAGGGAAAAAGACTTGAGATCCCGCGCGAGTTGAATCCCCAAATAGCTGCTATAATTGAGACCTGCTGGGCCAATGAGCCCTGGAAACGTCCTTCTTTTGCCAGTATTATGGATTCTCTGAGGTCATTACTCAAACCTCCTACACCTCAACCTGGTCTTCCAAACATACCTCTCACCTGA 2505 0.4523 MEMPARRSNYSLLSQVPDDQFSYAAGASAPSSSSDGKASRGGKLDRGFDWELVGDHRSTQQGNNRIGNLYSSIGLQRQSSGSSYGESSLSGGGEYYAQTLSTAAASEVDAFGYLHDDGFKVGEVRSKLSEGLPWTGGSSGKSWAQQTEESYQLQLALALRLSSDATCADDPNFLDPVPDEAASRISSSPEAISHRFWVNGCLSYSDKIPDGFYLIHGMDSYVWTVCTDLQENSRIPSVDSLKSVHPRIDSSLEVVLVDRRSDASLRELQNMVHNISCSSITTTEVVDQLSKLVCNCMGGSASAGEDELLSFWRDCSNNLKDCLGSVVFPIGSLSVGLCRHRAILFKVLADAIDLPCRIAKGCKYCKRDDASSCLVRFGLEREYLVDLIGKPGQLCEPDSLLNGPASISFCSPLRFPRLKPAETAIDFRTLAKQYFSDCLSLELFFDNSSAEQFDAKCSERSNVRPITTDSNRSLYPQVSLLNTHDQASETYMLCNPPQNITDSTTVGKYPPPLKNKRPVAIANDEVIEGRRFIEASQLLPSKPSRDVAFDMEDLAIPWNDLVLKEKIGSGSFGTVHRAEWNGSDVAVKILMEQDFHAERFKEFMREVAIMKHLRHPNIVLLMGAVTQPPNLSIVTEYLSRGSLYRLLHRPGAKEVLDERRRLSMAYDVAKGMNYLHKRNPPIVHRDLKSPNLLVDKKYTVKVCDFGLSRLKANTFLSSKSAAGTPEWMAPEVLRDEPSNEKSDIYSFGVIMWELATLQQPWGNLNPAQVVAAVGFKGKRLEIPRELNPQIAAIIETCWANEPWKRPSFASIMDSLRSLLKPPTPQPGLPNIPLT 834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02445 834 CDD STKc_MAP3K-like 567 815 - -
Trre1g02445 834 PRINTS Tyrosine kinase catalytic domain signature 635 648 IPR001245 GO:0004672|GO:0006468
Trre1g02445 834 PRINTS Tyrosine kinase catalytic domain signature 723 733 IPR001245 GO:0004672|GO:0006468
Trre1g02445 834 PRINTS Tyrosine kinase catalytic domain signature 786 808 IPR001245 GO:0004672|GO:0006468
Trre1g02445 834 PRINTS Tyrosine kinase catalytic domain signature 742 764 IPR001245 GO:0004672|GO:0006468
Trre1g02445 834 PRINTS Tyrosine kinase catalytic domain signature 676 694 IPR001245 GO:0004672|GO:0006468
Trre1g02445 834 Pfam Protein tyrosine and serine/threonine kinase 562 815 IPR001245 GO:0004672|GO:0006468
Trre1g02445 834 SMART serkin_6 561 819 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g02445 834 SUPERFAMILY Protein kinase-like (PK-like) 538 814 IPR011009 -
Trre1g02445 834 ProSiteProfiles Protein kinase domain profile. 561 819 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g02445 834 Gene3D Transferase(Phosphotransferase) domain 1 640 824 - -
Trre1g02445 834 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 140 819 - -
Trre1g02445 834 FunFam Serine/threonine-protein kinase isoform 1 551 639 - -
Trre1g02445 834 FunFam Serine/threonine-protein kinase CTR1 640 825 - -
Trre1g02445 834 ProSitePatterns Protein kinases ATP-binding region signature. 567 588 IPR017441 GO:0005524
Trre1g02445 834 Gene3D Phosphorylase Kinase; domain 1 554 639 - -
Trre1g02445 834 ProSitePatterns Serine/Threonine protein kinases active-site signature. 682 694 IPR008271 GO:0004672|GO:0006468
Trre1g02445 834 Pfam Ethylene-responsive protein kinase Le-CTR1 190 395 - -
Trre1g02445 834 MobiDBLite consensus disorder prediction 23 42 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02445 Trre-Chr1 19765370 19774244 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02445 1 826 MAP Kinase Kinase Kinase AT5G03730 64.486 0.0 988
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Trre1g02445 PK_Tyr_Ser-Thr 5.1e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02445 K14510 - gmx:100800648 1334.32