LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre1g02444	ATGAACCCAAACCATGAAAAAATCTCTACTTTGAACTCACCTTCCATGGTGGAGTTTGAAGCATCAGTGCCTGTACCTATGGAGTGTTTGCAATTGAACAACACTGTTCCTCCATTTCTTTCAAAAACATTTGATTTAGTTGATGACCCTTCTTTGAATCCAATTATATCATGGAATTCTAATGGTGTTAGCTTTGTGGTTTGGGATCCTTTGGAGTTTGCTAGAATTGTCTTGCCTAGACATTTCAAACACAACAATTTCTCCAGTTTTGTTCGTCAGCTTAATACTTATGGATTCCGGAAAATTGACACCGACAAATGGGAGTTTTTCAATGAAGGTTTCCAGAAAGGTAAGAAGCACTTACTGAAGAACATTCAAAGACGCCGATCCTCTCAATCTCAGCAAGTTGGTAACTATGTTGGATCTTCTTCTGATGCAGGAAAATCTGGAGTTGAGGTCGAGATAGAAAGATTGAGGAAAGAGAGGAGTGTGTTAATGCAAGAAGTGGTTGATTTACAGCAACAACAACGAATGACGGCTAATCACGCTGGTAATGTGAATCAAAGGCTTCAATCTGCTGAACAAAGACAGAAACAAATGGTATCTTTCTTAGCCAAGTTGTTTTCAAATCCGGACTTTTTAGCGCGACTTAAGCAGAAGAAAGAAAAAAAAGATATAGAATCTCCAAGAGTGAGAAGAAAGTTTGTTAAGCAAAACCAAAATGAAGAAGAAGGAAATCTCAAAGATGGGAAAATTGTTAGGTACAAACCCAATTGGGGGAATATAAACATGTCTTGTGAAACTCAAGAACTAAGTCATGTTTCCATTGAACACACTCCTCAATATCTTTCACATGATTTAGCTAAAGAAATGAGTGCATGTGAAGAAGATTTTACTTCTCAAATTGAGAATGTTTCATTAGATGAATATGCTGCAATGAATGGAATTATTTCAACTAATTCAGAAACCATTATTGGTGAAGGATCATCTAGCTTTGGTTTTGATGAACCTCTTTCCAAAGGTAAAAATGTTATTAGTCCAAATGAAGTAGTTATTCCTGAGAATTTTAAAGGGTTTCAAGAGTTTCAATTTATTGGGACTGAAAATATTATCAAGCAAGAAGATGTATGGGATCCTAATTTCAATATTGGTGTTACTACTTCAAGCTGTGGGAATGAAATGTGGGGTAATCCTATGAATTATGGTGTGCCAGACTTTGGAATTATTACAAGTGGTGACATGTCTGAGACAGATATGTGGGATATTGGTTTTGGAAATTTAGGTATTGATAAGTGGCCAGCTAATGAATCTCCTTTTGATGAGATAGATAGTCAAGTTGGTAAGCCAAAAGATGATTAG	1359	0.3613	MNPNHEKISTLNSPSMVEFEASVPVPMECLQLNNTVPPFLSKTFDLVDDPSLNPIISWNSNGVSFVVWDPLEFARIVLPRHFKHNNFSSFVRQLNTYGFRKIDTDKWEFFNEGFQKGKKHLLKNIQRRRSSQSQQVGNYVGSSSDAGKSGVEVEIERLRKERSVLMQEVVDLQQQQRMTANHAGNVNQRLQSAEQRQKQMVSFLAKLFSNPDFLARLKQKKEKKDIESPRVRRKFVKQNQNEEEGNLKDGKIVRYKPNWGNINMSCETQELSHVSIEHTPQYLSHDLAKEMSACEEDFTSQIENVSLDEYAAMNGIISTNSETIIGEGSSSFGFDEPLSKGKNVISPNEVVIPENFKGFQEFQFIGTENIIKQEDVWDPNFNIGVTTSSCGNEMWGNPMNYGVPDFGIITSGDMSETDMWDIGFGNLGIDKWPANESPFDEIDSQVGKPKDD	452

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre1g02444	452	FunFam	Heat stress transcription factor B-4	31	129	-	-
	Trre1g02444	452	Gene3D	-	31	129	IPR036388	-
	Trre1g02444	452	Pfam	HSF-type DNA-binding	39	128	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Trre1g02444	452	MobiDBLite	consensus disorder prediction	127	145	-	-
	Trre1g02444	452	Coils	Coil	148	175	-	-
	Trre1g02444	452	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	24	246	IPR027725	-
	Trre1g02444	452	SMART	hsfneu3	35	128	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Trre1g02444	452	MobiDBLite	consensus disorder prediction	127	147	-	-
	Trre1g02444	452	SUPERFAMILY	"Winged helix" DNA-binding domain	34	128	IPR036390	-
	Trre1g02444	452	PRINTS	Heat shock factor (HSF) domain signature	77	89	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Trre1g02444	452	PRINTS	Heat shock factor (HSF) domain signature	90	102	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Trre1g02444	452	PRINTS	Heat shock factor (HSF) domain signature	39	62	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Trre1g02444	452	ProSitePatterns	HSF-type DNA-binding domain signature.	78	102	IPR000232	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre1g02444	Trre-Chr1	19758068	19760351	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre1g02444	21	408	HSF	AT5G03720	44.924	6.02e-97	295

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Trre1g02444		HSF_DNA-bind	7.2e-32	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre1g02444	K09419		-	gmx:100807323	530.406