Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02438 ATGGATGACCACCATAACAATCATGGTCACCACCACCATCACCAACAGCAACAGCAACAATATGGAAGTATGACAACTGATCTAAGACAACTAGTAAACGGAACAAGGTCAACCCATTTTCCGTCTATGCCGCCGGCTACCGCGGAGGATTTTTTCCCCGGTCACCGGAATCTAACTGCTTTGTTAACTAATACACAGCAACAAAATGAACAACAACAGTATGAGATAAATCAGATGATGATGTTGGGTCGTGGAGCTGTACTTGAAGATTTCAATAACATCACTAATACTCATCATCATCATCATGTTCTACCACAACAACCACCAACAACAACAACAGCTAGTGCTAGTGTTTCAACACCTGAGACCACAGGATGTATCGGTGGAGACGCATCCACTGGAAGATGGCCCAGACAAGAAACTCTTACTCTTCTTGAGATCAGATCTCGTCTTGACCCTAAATTTAAAGAAGCTAATCAAAAGGGTCCTTTATGGGATGAAGTCTCTAGGATAATGTCTGAAGAGCATGGATATCAAAGAAGTGGAAAAAAGTGCAGGGAGAAATTTGAGAATCTATACAAGTATTACAAGAAGACAAAAGAAGGTAAAGCAGGAAGGCATGATGGTAAACATTACAGATTCTTTCGTCAACTTGAAGCTTTATATGGTGAAAACAGTAACCAAACTTCTCTACCAGAAACCAATTTTGTCAACTTGAACAATTTCCAAAACCCTTCAAAAAATACAAATAATCAAGACAATAGCCTCAGTCTTACTAACTCAACTGACTTTGAAACTTCATCATCTGATGATGAGAATGATGATCACAAGGGAAAGAAGAAGAGTAGTAGAAGGAGGAGTTGGAAGGTTAAGATAAAAGAGTTTATTGATTCACAAATGAAGAAGCTTGTTGAGAAGCAAGAAGATTGGTTGAGTAAGCTTGTGAAAACACTTGAGGAGAAGGAAAATGAGAGAGTGTTAAGAGAAGAAGAGTGGAGGAAACAAGAGGTAAAAAGGGTAGAAAAGGAACAAAAGTTTTGGAGTAAAGAGAGAGAATGGATTGAAGCAAGAGATGCTGCTTTAATGGAAGCTTTGAAGAATATAGGAGGAAGGGAAATGAAGGTTGAACATGAATCTCATCATGAACATAACAAGGGTATAAATGTAATAAATGAAGGTGAGATTCATCAAAACAACTTTGAAAACCAAAATGAAGATGGGAGTGAAATCTTGAATAGTAATGTGAGAGGTTCTGATAACTATCCAAGAGATTCTTCAAAAGAAGGAAACAAGAAGAGAAAGGAGAATTTCTACTTCAACAATAATGATCAATGTTCTATGTACAATCAAGGAAGTAGTTATTGTGATGTCAATGATCAAAGAGAGGAGATTGTTAAGCTACAAAGGAATGATCATGGTTCTTCACCTTCTGATTCTAATGTTGGTAATGTTGCTAATGGTGATACTTGCTTTCCTTTCTTGCTTAATGAGGGTGGAAATTTGTGGGAGAATTTTGGCTTGAAAATCAATAAATCAAACCAAAACCATTGA 1551 0.3733 MDDHHNNHGHHHHHQQQQQQYGSMTTDLRQLVNGTRSTHFPSMPPATAEDFFPGHRNLTALLTNTQQQNEQQQYEINQMMMLGRGAVLEDFNNITNTHHHHHVLPQQPPTTTTASASVSTPETTGCIGGDASTGRWPRQETLTLLEIRSRLDPKFKEANQKGPLWDEVSRIMSEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGRHDGKHYRFFRQLEALYGENSNQTSLPETNFVNLNNFQNPSKNTNNQDNSLSLTNSTDFETSSSDDENDDHKGKKKSSRRRSWKVKIKEFIDSQMKKLVEKQEDWLSKLVKTLEEKENERVLREEEWRKQEVKRVEKEQKFWSKEREWIEARDAALMEALKNIGGREMKVEHESHHEHNKGINVINEGEIHQNNFENQNEDGSEILNSNVRGSDNYPRDSSKEGNKKRKENFYFNNNDQCSMYNQGSSYCDVNDQREEIVKLQRNDHGSSPSDSNVGNVANGDTCFPFLLNEGGNLWENFGLKINKSNQNH 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02438 516 ProSiteProfiles Myb-like domain profile. 128 193 IPR001005 -
Trre1g02438 516 PANTHER FI21293P1 110 388 - -
Trre1g02438 516 Gene3D - 136 198 - -
Trre1g02438 516 MobiDBLite consensus disorder prediction 99 133 - -
Trre1g02438 516 MobiDBLite consensus disorder prediction 404 420 - -
Trre1g02438 516 FunFam trihelix transcription factor PTL-like 136 198 - -
Trre1g02438 516 Pfam Myb/SANT-like DNA-binding domain 135 221 IPR044822 -
Trre1g02438 516 MobiDBLite consensus disorder prediction 232 283 - -
Trre1g02438 516 MobiDBLite consensus disorder prediction 232 266 - -
Trre1g02438 516 MobiDBLite consensus disorder prediction 1 23 - -
Trre1g02438 516 MobiDBLite consensus disorder prediction 99 127 - -
Trre1g02438 516 MobiDBLite consensus disorder prediction 404 434 - -
Trre1g02438 516 CDD GT1 135 200 - -
Trre1g02438 516 Coils Coil 304 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02438 Trre-Chr1 19693162 19697028 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02438 423 511 Trihelix Transcription Factor Family AT5G03680 34.286 9.47e-06 46.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Trre1g02438 Myb_DNA-bind_4 2.4e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02438 - - mtr:25483883 706.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g02438 1 19693162 19697028 Trre1g02438 1 19693162 19697028 ECH
Trre13g04425 13 51780598 51783077 Trre1g02438 1 19693162 19697028 PCT