Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02436 ATGGACTTTAGAAAACCAAAATCGGTCTTCCACTGCATCTCTTCAAGAGAGCTCAATTCCTTTCCAGTTCGGAAACGGCCTGCAACTGTCTTCAATGAGATTGGAGCTATAGATGCACGGTACATTAGCGACGCGGATCTGTGGTATGTGCCCTGCGCTCTCTCCTTCAGTAAGAGTATAAAACATTCTTACGACCTTGCTGTTGCTGATGACGATGGCTACGTTCACTTGTTTAATACTCGAAGCAGAAGTATGATTGACGAATGGAGACCGCACGAAGATACTATTTTGGATGTCTGCTGGCTTAAGGAAGATACTCGAATTGTCACCGCTTCTTGTGATGAAACTGTGAAAGTATGGGATGTTGAACAAAAGGCGTGTCTCAGAGAGCTAACGGAGCACGAGGACACGGTTGAAACTATTTGTTCTCATCCTACTAGTGATGATATAATTGTCTCTGGTTCAAGTGATGGATCCTTTTGTCTTTGGGACTTAAGATGCAATTCGATTACTGTTAAAGGAAATGCACACCGTCATGTTAAATACGGACAAGTTGAAGCCATGAAAATTACATCTGTTCTTTGGCTCAAGGATCAAGTTTCCATAGCCACTGGTGGATCAAAAGATAGTGTGCCAAAAATTTGGGATATCAGATATTTGAATCTTGATGTCTCACCTATAGGTCCTCTTCCTCAGCCAGCAGGACAGCAAAGATTAGAGGGTATAACTAGCTTGTCTCAAGATGACCGTGGAGTTTTACTCTCGGCCTCCTGCAAGGATAGCCGAATTTATCTATATAATACACTTCAACTTGAAAGGGGGCCTTTAAGATCCTATGAAGCTGGTAGTTTAAGATCTTATGTGAAGGCTGCAATTAGCCCTGATGCATTGAACATAGCTAGCGGTTCTGAAGAAGGAAATATATATATTTCGAAGGTCAACAATCCTCAAGAACAACCTACAATTTTGTTCCCGAGCGAAGATGAAAACGTGTCCTTAGTAGACTGGTCCTTCTCCGAGTTTGGAAAATTAGCGACTGCTGGTGAAAATATAGTTCGAATATGGGATCAAGAACATCGTGATATGGAATAA 1092 0.4185 MDFRKPKSVFHCISSRELNSFPVRKRPATVFNEIGAIDARYISDADLWYVPCALSFSKSIKHSYDLAVADDDGYVHLFNTRSRSMIDEWRPHEDTILDVCWLKEDTRIVTASCDETVKVWDVEQKACLRELTEHEDTVETICSHPTSDDIIVSGSSDGSFCLWDLRCNSITVKGNAHRHVKYGQVEAMKITSVLWLKDQVSIATGGSKDSVPKIWDIRYLNLDVSPIGPLPQPAGQQRLEGITSLSQDDRGVLLSASCKDSRIYLYNTLQLERGPLRSYEAGSLRSYVKAAISPDALNIASGSEEGNIYISKVNNPQEQPTILFPSEDENVSLVDWSFSEFGKLATAGENIVRIWDQEHRDME 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02436 363 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 131 166 - -
Trre1g02436 363 ProSiteProfiles Trp-Asp (WD) repeats profile. 89 130 IPR001680 GO:0005515
Trre1g02436 363 PRINTS G protein beta WD-40 repeat signature 151 165 IPR020472 -
Trre1g02436 363 PRINTS G protein beta WD-40 repeat signature 203 217 IPR020472 -
Trre1g02436 363 PRINTS G protein beta WD-40 repeat signature 108 122 IPR020472 -
Trre1g02436 363 Gene3D - 227 357 IPR015943 GO:0005515
Trre1g02436 363 PANTHER LETHAL 2 DENTICLELESS PROTEIN RETINOIC ACID-REGULATED NUCLEAR MATRIX-ASSOCIATED PROTEIN 27 359 - -
Trre1g02436 363 SMART WD40_4 272 312 IPR001680 GO:0005515
Trre1g02436 363 SMART WD40_4 232 267 IPR001680 GO:0005515
Trre1g02436 363 SMART WD40_4 176 216 IPR001680 GO:0005515
Trre1g02436 363 SMART WD40_4 317 356 IPR001680 GO:0005515
Trre1g02436 363 SMART WD40_4 124 164 IPR001680 GO:0005515
Trre1g02436 363 SMART WD40_4 82 121 IPR001680 GO:0005515
Trre1g02436 363 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 89 123 - -
Trre1g02436 363 Gene3D - 50 226 IPR015943 GO:0005515
Trre1g02436 363 ProSitePatterns Trp-Asp (WD) repeats signature. 108 122 IPR019775 -
Trre1g02436 363 ProSiteProfiles Trp-Asp (WD) repeats profile. 131 173 IPR001680 GO:0005515
Trre1g02436 363 SUPERFAMILY WD40 repeat-like 51 358 IPR036322 GO:0005515
Trre1g02436 363 Pfam WD domain, G-beta repeat 89 121 IPR001680 GO:0005515
Trre1g02436 363 Pfam WD domain, G-beta repeat 126 164 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02436 Trre-Chr1 19679269 19682032 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02436 57 260 U-box Gene Family AT2G33340 26.291 3.46e-11 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02436 K11790 - tpra:123887452 431.795