Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02435 ATGGACTATAGAAAACCAAAATCGGTCCCCCACAGCATCGCTTCAAGGGAACTCAATTCCTTTCCAGTTCGGAGACAGCCTGAAACAATCTTCAATGAAATTGGAGCTATAAATGCACGGCGCTATTGCGACCAAGAAAACCGGAATTTGACGTACATTCCCTGCGCTCTCTCCTTCTGTAAGAGTTTAAAACATTCTTACGACCTTGCTGTTGCTGATGACAATGGCTACGTTCACTTGTTTAACAGTCGAAGCAGAAATAATATTAGCGAATGGAAAACGCATGAAGATATTGTTTTGGATGTCTGTTGGCTTAAGGAAGATACTCGAATTGTCACTGCTTCTTGGGATCAAAGTGTGAAAATATGGGATGTTGAACAAAAGACGTGTCTCAGAAAGCTATGGGAGCACACGGACAGGGTTGCAACTGTTTGTTCTCATCCTACTAATGATGATATAATAGTCTCTGGTTCAAACGATGGATCCTGTCGTCTTTGGGACTTAAGATGCAATTCGATTACTGTTAAAGGAAATGCACACCGTCATGTTAAATACGGACAAGTTGAAGCCATGAAAATTACATCTGTTCTTTGGCTCAAGGATCAAGTTTCCATAGTCACTGGTGGATCAAAAGATAGTGTGCCAAAAATTTGGGATATCAGATATTTGAATCTTGATGTCTCACCTATAGGTCCTCTTCCTCAGCCAGCAGGACAGCAAAGATTAGAGGGTATAACTAGCTTGTCTCAAGATGACAGTGGAGTTTTACTCTCGGCCTCCTGCAAGGATAGCCGAATTTATCTATATAACACACTTCAACTAGAAAGGGGGCCTTTAAGATCCTACGAAGCTGGTAGTTTAAGATCTGATAATAAGGTTGCAATCAGCCCTGATGCATTGAACATAGCAAGCGGTTCAGTTGAAGGAAATATATATATTTCGCAGGTCAACAATCCTCAAGAACAACGTACTATTTTGTCGGCGAGGGAACACAAAAATGCATTCTTAGTGGACTGGTCCTTCTCCGAGTTTGGAAAATTAGCAACTGCTAGTGATCAAATAGTTCAAATATGGGATAAAGAACGTTGA 1089 0.4096 MDYRKPKSVPHSIASRELNSFPVRRQPETIFNEIGAINARRYCDQENRNLTYIPCALSFCKSLKHSYDLAVADDNGYVHLFNSRSRNNISEWKTHEDIVLDVCWLKEDTRIVTASWDQSVKIWDVEQKTCLRKLWEHTDRVATVCSHPTNDDIIVSGSNDGSCRLWDLRCNSITVKGNAHRHVKYGQVEAMKITSVLWLKDQVSIVTGGSKDSVPKIWDIRYLNLDVSPIGPLPQPAGQQRLEGITSLSQDDSGVLLSASCKDSRIYLYNTLQLERGPLRSYEAGSLRSDNKVAISPDALNIASGSVEGNIYISQVNNPQEQRTILSAREHKNAFLVDWSFSEFGKLATASDQIVQIWDKER 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02435 362 Pfam WD domain, G-beta repeat 87 124 IPR001680 GO:0005515
Trre1g02435 362 Pfam WD domain, G-beta repeat 129 167 IPR001680 GO:0005515
Trre1g02435 362 Gene3D - 230 360 IPR015943 GO:0005515
Trre1g02435 362 ProSitePatterns Trp-Asp (WD) repeats signature. 111 125 IPR019775 -
Trre1g02435 362 SMART WD40_4 275 315 IPR001680 GO:0005515
Trre1g02435 362 SMART WD40_4 179 219 IPR001680 GO:0005515
Trre1g02435 362 SMART WD40_4 127 167 IPR001680 GO:0005515
Trre1g02435 362 SMART WD40_4 321 359 IPR001680 GO:0005515
Trre1g02435 362 SMART WD40_4 235 270 IPR001680 GO:0005515
Trre1g02435 362 SMART WD40_4 85 124 IPR001680 GO:0005515
Trre1g02435 362 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 92 126 - -
Trre1g02435 362 ProSiteProfiles Trp-Asp (WD) repeats profile. 134 176 IPR001680 GO:0005515
Trre1g02435 362 ProSitePatterns Trp-Asp (WD) repeats signature. 154 168 IPR019775 -
Trre1g02435 362 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 134 169 - -
Trre1g02435 362 PANTHER LETHAL 2 DENTICLELESS PROTEIN RETINOIC ACID-REGULATED NUCLEAR MATRIX-ASSOCIATED PROTEIN 6 362 - -
Trre1g02435 362 Gene3D - 38 229 IPR015943 GO:0005515
Trre1g02435 362 PRINTS G protein beta WD-40 repeat signature 111 125 IPR020472 -
Trre1g02435 362 PRINTS G protein beta WD-40 repeat signature 154 168 IPR020472 -
Trre1g02435 362 PRINTS G protein beta WD-40 repeat signature 206 220 IPR020472 -
Trre1g02435 362 SUPERFAMILY WD40 repeat-like 55 359 IPR036322 GO:0005515
Trre1g02435 362 ProSiteProfiles Trp-Asp (WD) repeats profile. 92 133 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02435 Trre-Chr1 19674475 19677557 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02435 65 263 U-box Gene Family AT2G33340 26.442 9.42e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02435 K11790 - tpra:123887452 399.438