Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02434 ATGGACTATAGAAAACCAAAATCGGTCCCCCACAGCATCGCTTCAAGGGAACTCAATTCCTTTCCAGTTCGGAGACAGCCTGAAACAATCTTCAATGAAATTGGAGCTATAAATGCACGGCGCTATTGCGACCAAGAAAACCGGAATTTGACGTACATTCCCTGCGCTCTCTCCTTCTGTAAGAGTTTAAAACATTCTTACGACCTTGCTGTTGCTGATGACAATGGCTACGTTCACTTGTTTAACAGTCGAAGCAGAAATAATATTAGCGAATGGAAAACGCATGAAGATATTGTTTTGGATGTCTGTTGGCTTAAGGAAGATACTCGAATTGTCACTGCTTCTTGGGATCAAAGTGTGAAAATATGGGATGTTGAACAAAAGACGTGTCTCAGAAAGCTATGGGAGCACACGGACAGGGTTGCAACTGTTTGTTCTCATCCTACTAATGATGATATAATAGTCTCTGGTTCAAACGATGGATCCTGTCGTCTTTGGGACTTAAGATGCAATTCGATTACTGTTAAAGGAAATGCACACCGTCATGTTAAATACGGACAAGTAAGGAGGAGCAGGGTTGAAGCCATGAAAATTACATCTGTTCTTTGGCTCAAGGATCAAGTTTCCATAGTCACTGGTGGATCAAAAGATAGTGTGCCAAAAATTTGGGATATCAGATATTTGAATCTTGATGTCTCACCTATAGGTCCTCTTCCTCAGCCAGCAGGACAGCAAAGATTAGAGGGTATAACTAGCTTGTCTCAAGATGACAGTGGAGTTTTACTCTCGGCCTCCTGCAAGGATAGCCGAATTTATCTATATAACACACTTCAACTAGAAAGGGGGCCTTTAAGATCCTACGAAGCTGGTAGTTTAAGATCTGATAATAAGGTTGCAATCAGCCCTGATGCATTGAACATAGCAAGCGGTTCAGTTGAAGGAAATATATATATTTCGCAGGTCAACAATCCTCAAGAACAACGTACTATTTTGTCGGCGAGGGAACACAAAAATGCATTCTTAGTGGACTGGTCCTTCTCCGAGTTTGGAAAATTAGCAACTGCTAGTGATCAAATAGTTCAAATATGGGATAAAGAACGTTGA 1104 0.4121 MDYRKPKSVPHSIASRELNSFPVRRQPETIFNEIGAINARRYCDQENRNLTYIPCALSFCKSLKHSYDLAVADDNGYVHLFNSRSRNNISEWKTHEDIVLDVCWLKEDTRIVTASWDQSVKIWDVEQKTCLRKLWEHTDRVATVCSHPTNDDIIVSGSNDGSCRLWDLRCNSITVKGNAHRHVKYGQVRRSRVEAMKITSVLWLKDQVSIVTGGSKDSVPKIWDIRYLNLDVSPIGPLPQPAGQQRLEGITSLSQDDSGVLLSASCKDSRIYLYNTLQLERGPLRSYEAGSLRSDNKVAISPDALNIASGSVEGNIYISQVNNPQEQRTILSAREHKNAFLVDWSFSEFGKLATASDQIVQIWDKER 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02434 367 Gene3D - 242 367 IPR015943 GO:0005515
Trre1g02434 367 ProSitePatterns Trp-Asp (WD) repeats signature. 111 125 IPR019775 -
Trre1g02434 367 Pfam WD domain, G-beta repeat 87 124 IPR001680 GO:0005515
Trre1g02434 367 Pfam WD domain, G-beta repeat 129 167 IPR001680 GO:0005515
Trre1g02434 367 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 92 126 - -
Trre1g02434 367 SMART WD40_4 240 275 IPR001680 GO:0005515
Trre1g02434 367 SMART WD40_4 127 167 IPR001680 GO:0005515
Trre1g02434 367 SMART WD40_4 184 224 IPR001680 GO:0005515
Trre1g02434 367 SMART WD40_4 85 124 IPR001680 GO:0005515
Trre1g02434 367 SMART WD40_4 326 364 IPR001680 GO:0005515
Trre1g02434 367 SMART WD40_4 280 320 IPR001680 GO:0005515
Trre1g02434 367 ProSiteProfiles Trp-Asp (WD) repeats profile. 134 176 IPR001680 GO:0005515
Trre1g02434 367 ProSitePatterns Trp-Asp (WD) repeats signature. 154 168 IPR019775 -
Trre1g02434 367 Gene3D - 41 236 IPR015943 GO:0005515
Trre1g02434 367 PRINTS G protein beta WD-40 repeat signature 211 225 IPR020472 -
Trre1g02434 367 PRINTS G protein beta WD-40 repeat signature 154 168 IPR020472 -
Trre1g02434 367 PRINTS G protein beta WD-40 repeat signature 111 125 IPR020472 -
Trre1g02434 367 SUPERFAMILY WD40 repeat-like 55 364 IPR036322 GO:0005515
Trre1g02434 367 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 134 169 - -
Trre1g02434 367 PANTHER LETHAL 2 DENTICLELESS PROTEIN RETINOIC ACID-REGULATED NUCLEAR MATRIX-ASSOCIATED PROTEIN 6 367 - -
Trre1g02434 367 ProSiteProfiles Trp-Asp (WD) repeats profile. 92 133 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02434 Trre-Chr1 19674475 19677557 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02434 65 268 U-box Gene Family AT2G33340 25.822 3.88e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02434 K11790 - tpra:123887452 393.275