Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02433 ATGAATAAAAGAAGAGGTGGAAGGAAGAAGTTCCATGAGACTCGACATCCAATTTACAAAGGAGTGAGACAAAGAAATGGAAAATGGGTGTGTGAGATACGTCAACCTAACAACAAAACTCGTGTTTGGCTTGGAACATTTTCTCACCCGGACATGGCAGCTATAGCTTATGATGTTGCTGCTTTAGCTTTCAAAGGTCTATTCAGTTTGCTGCGACAAAAGCGGCCGAAAAACATTTTTCTCCATGTCAGGATTCAAAATCATTCCTTGTGGAGATTACAAAGAATGATTCTGAATCCTTGGAGAAGTCTTTGTCAGAAAGCCTTTTTTGGGATGAGGAGGAGATTTTCAACATGCCAGGATTGA 366 0.4044 MNKRRGGRKKFHETRHPIYKGVRQRNGKWVCEIRQPNNKTRVWLGTFSHPDMAAIAYDVAALAFKGLFSLLRQKRPKNIFLHVRIQNHSLWRLQRMILNPWRSLCQKAFFGMRRRFSTCQD 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02433 121 SMART rav1_2 18 75 IPR001471 GO:0003700|GO:0006355
Trre1g02433 121 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 3 66 IPR045277 GO:0003700
Trre1g02433 121 Pfam AP2 domain 17 66 IPR001471 GO:0003700|GO:0006355
Trre1g02433 121 SUPERFAMILY DNA-binding domain 18 69 IPR016177 GO:0003677
Trre1g02433 121 Gene3D AP2/ERF domain 18 72 IPR036955 GO:0003700|GO:0006355
Trre1g02433 121 ProSiteProfiles AP2/ERF domain profile. 18 76 IPR001471 GO:0003700|GO:0006355
Trre1g02433 121 CDD AP2 17 66 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02433 Trre-Chr1 19672108 19672549 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02433 3 71 AP2-EREBP Transcription Factor Family AT5G51990 68.571 1.34e-28 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Trre1g02433 AP2 4.9e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02433 - - aprc:113870892 131.724