Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02432 ATGGAAAAGAAACTTGAACACGGAGTTCATGTAGTGTCTGGAACTCCCGGTCGAGTTCTTGACATGATCAAAAGGAGAACATTGCACACAAGGTCTATCAAGTTGCTTGTTCTGGATGAATCTGATGAACTGCTGAGCAGAGGTTTTAAAGATCAAATTTATGATGTGTACAGATATCTCCCGCCGAATCTTCAGGTTGTCCTGGTTTCCGCTACGCTACCTCATGATATTTTGGAGATGACAAATAAGTTCATGACAGATCCTGTCAGGGTCCTTATAAAACGCGATGAATTGACATTGGAGGGTATCAAGCAATTTTTCGTTGCCGTTGAAAGGGAGGAATGGAAGTTTGACACTCTGTGCGATCTTTATGATATTCTTACCATTACTCAAGCTGTTATATTCTGTAACACCAAGCGAAAGGTGGACTGGTTAACTGAAAAATTGCGGAACAATAATTTCACCGTCTCCTCAATGCACGGTGACATGCCTCAAAGAGAAAGAGATGCAATTATGGGAGAATTTCGTGCGGGAACAACCCGAGTATTTATAACAACAGATGTTTGGGCTCGTGGCCTTGATGTGCAGCAGGCAAGTTGTTAA 603 0.4212 MEKKLEHGVHVVSGTPGRVLDMIKRRTLHTRSIKLLVLDESDELLSRGFKDQIYDVYRYLPPNLQVVLVSATLPHDILEMTNKFMTDPVRVLIKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDILTITQAVIFCNTKRKVDWLTEKLRNNNFTVSSMHGDMPQRERDAIMGEFRAGTTRVFITTDVWARGLDVQQASC 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02432 200 Pfam Helicase conserved C-terminal domain 117 199 IPR001650 -
Trre1g02432 200 Pfam DEAD/DEAH box helicase 3 77 IPR011545 GO:0003676|GO:0005524
Trre1g02432 200 SMART helicmild6 143 199 IPR001650 -
Trre1g02432 200 Gene3D - 1 98 IPR027417 -
Trre1g02432 200 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 91 IPR014001 -
Trre1g02432 200 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 102 200 IPR001650 -
Trre1g02432 200 CDD SF2_C_DEAD 103 197 - -
Trre1g02432 200 Gene3D - 99 200 IPR027417 -
Trre1g02432 200 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 6 199 - -
Trre1g02432 200 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 199 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02432 Trre-Chr1 19666770 19667636 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02432 3 199 Eukaryotic Initiation Factors Gene Family AT3G19760 84.772 8.52e-128 364
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02432 K13025 - gmx:100795032 368.622