Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02430 ATGGCAGCAGCAGCAGCAGCAGCTCAGAAGCACTTACATGAACTACTCAAAGAAGATCAAGAACCATTCCTTCTAACAAACTACATTTCAGAAAAACGTAATAATTTACTAAAAAGACCTTCCTCAAACACCACTCTACAATTCAAGAAACAAAAACCACCACCACCACCAACAACAACAACAATCGTTAATCTCTGCAAAAATGCTTGTTTTTCCTCATTCCAAAACACACCAGATATAAAAAATTCACCACTTTTTGAATTTTCTTCACCAACAAAAACCCCATCTTCCAATGCTATCTTCCTTCAAATCCCTACTAAAACGGCGTCGCTTTTACTCGAAGCAGCTCTCAAAATTCAGAATAATAAAAAACCCCATTACCAAAATAAAAACAAAAACAAATCTTTTGGGGTTTTTAGTTCGTTGTTGAAGAAACTAACTCAAAGAAACAGAAACAAAAAGAATGATAATAATGTTTCTGTTAAGGATATTTTGAGATGGGATTCTTCTATTGGAAAAAGAAACATAAAATGTTACAATGAAATCAGAGTGTGTTCTTGTGAAGTGGGGTTCACATGTTCTTCTTGTAGTGCTGTTTGGTCTGAGAGTAATGAAGATAAATCTATGGATATGGAAACTTCGAGTAGTGGAAATTCTTGTGATTGTGTTGAAGAATTTGTGATGAATAAGAAGAAACAGAATGCTACAGATTGTGATTGTTTTGATCATAATGGGTTTTTCTGTGAAAGTCCTTTTCGTTTTGTTCTTGAAAGGAGTGCGTCTTCTTCTTCTTCTGGCCACCGTACGCCGGAGTTTTCTTCGCCGCCGGATTCACCTAGTCGCCACCAAATAGAGGACAAAGAAAATAATGGAGTTGACGGTGTGAACAAATTCCAATCAGGTGAAGATGACGAAGAGAAGGAACAGTGTAGTCCAGTATCTGTTTTAGATCCACCCTTTCAGGATTATGATGATGATGATGATTGTCATGAAAACGACGATGAAGAAGGTGATTTCGATTTGGAGTGTAGCTACGCCAATGTACAAAGAACCAAGCAACATCTATTGGATAGACTTCGTAGATTCGAGCAACTTGCAGAGTTAGATCCACTAGAGCTTGAGAAAAGAATGCAAGAAGACGAGTACGAAACATTTTTCGAAGACGATGATGATGAAGATGAAAGTGATGCACCATGTGAAGAGAAGGCTCTAAGAGAAATAGTCAATGAAATCCTATGTCATTCAAGTGTTCATGATAGATGGCAAGACCAAGAAGTTCTTAAGAGACTTGTTTATGATCTCATTAAGGAAGAAGAGAAAGAACTGAATTGTTCACAAGATATGAACAATGTAATGAAAAGGGTATGCAAGAAGATGGAATTGTGGAAAGAAGTGGAATCTAACACTATTGATATGATGATAGAAGAGGATTTTACTAGAGAGGAAATTGGGTGGAAGAAAAATTATGAGGAGACAAAAGAGCTAGTTGGAGAGGTTGAGCTTGCTATCTTTGGCTTTTTAGTTGATGAATTTTCAAAGGAATTAGTATGTTAA 1554 0.3655 MAAAAAAAQKHLHELLKEDQEPFLLTNYISEKRNNLLKRPSSNTTLQFKKQKPPPPPTTTTIVNLCKNACFSSFQNTPDIKNSPLFEFSSPTKTPSSNAIFLQIPTKTASLLLEAALKIQNNKKPHYQNKNKNKSFGVFSSLLKKLTQRNRNKKNDNNVSVKDILRWDSSIGKRNIKCYNEIRVCSCEVGFTCSSCSAVWSESNEDKSMDMETSSSGNSCDCVEEFVMNKKKQNATDCDCFDHNGFFCESPFRFVLERSASSSSSGHRTPEFSSPPDSPSRHQIEDKENNGVDGVNKFQSGEDDEEKEQCSPVSVLDPPFQDYDDDDDCHENDDEEGDFDLECSYANVQRTKQHLLDRLRRFEQLAELDPLELEKRMQEDEYETFFEDDDDEDESDAPCEEKALREIVNEILCHSSVHDRWQDQEVLKRLVYDLIKEEEKELNCSQDMNNVMKRVCKKMELWKEVESNTIDMMIEEDFTREEIGWKKNYEETKELVGEVELAIFGFLVDEFSKELVC 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02430 517 PANTHER OS04G0572500 PROTEIN 8 515 - -
Trre1g02430 517 MobiDBLite consensus disorder prediction 280 311 - -
Trre1g02430 517 MobiDBLite consensus disorder prediction 261 279 - -
Trre1g02430 517 Coils Coil 345 365 - -
Trre1g02430 517 MobiDBLite consensus disorder prediction 261 336 - -
Trre1g02430 517 Pfam Domain of unknown function (DUF4378) 373 510 IPR025486 -
Trre1g02430 517 MobiDBLite consensus disorder prediction 320 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02430 Trre-Chr1 19649381 19655542 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02430 7 347 TRM (TON1 Recruiting Motif) Superfamily AT5G03670 38.043 5.63e-49 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02430 - - gmx:100814311 475.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g02430 1 19649381 19655542 Trre1g02430 1 19649381 19655542 ECH
Trre13g04430 13 51848843 51851834 Trre1g02430 1 19649381 19655542 PCT