Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02427 ATGGGATCATTCTCGGGCATTTGTGAAATTGTTGAAGCAAGGGAAGACCTAAATACAGGGATATATCAGTCCAGTTCTGGATATAGTGTGTCTGAGAAAAATCAGAAGCTTCCTGCGGTGAAACTGGGATACAAGGATAATCTAGATAATGATATTAATAAGCTGTTTGAGTCAATTACTCTCAAGTCTTCATCAAGGGATTTGAGCTTTCTACCAGATGGAACAAGCCCTAAGATGAAAAATGCATTAAAAAAGCCAATGACAATGGGTGTACCTCGATCTCCACGAGTTGGGATTTCTGAGCCGGTGACTTTGAAGCAGGCATTAAGAGACCTATGTATATCTAAGGCATCGGAAATGGCTGCTATGAAAAGGTTATCAAAGTCAGCAGCTTCTCCAAGAATATCAGAGGCCGGGAAGATACAGACATTGTACAATTCGGTTGTCACTGATGCTAGGAGATCCGGGCCTTCTAATGTTGAGAGTAAAGGGAGTTCAACTGAAATATCTCTGGTGCTAGAAGAAGACAAGTCACTTGTCTTGAATAAAGAATCTCCGTCTCATGAAACTTCCAAAAGCACACCATTGAGCCAAAAGGCTCATTCTTCCAAAATCGCAGTTGCAACTACACAAAATGATACAGGGGCTTCGTTGATGCAAAGTGATTTGGAATGTTCGTCAAGTAAAGTTGGGATTTCAGGGGTTTCAGCCCAACCATCAGAACCTACTCAAATAGAAAATCAAATGTCTGCTTCCTCTTCATCTTGTTGTAACACCGATGGAAGTAAAGTAGAGTTGCCAGAAAAAGATTCTTCACCTAAAAAGTTAGGAAATAAAGCATCTATGTCGAAGAATGTGCGGAAAGGTATGTTACAAACAATATCTTCCTCTTCAGGGAATGGCAATAAAGTGTGCAAACTTTCGCGCAATAGCCCCCGAACAGTAAAGTCGGTCATTAAAACCAAGAGTTTGGGTAAGAAGAAACTAAAGCAGGGTTCTGATTCTGCTTTACATGTTCCTCCACCCAATGAGGGAAACAACAACCCAGTTCCGGCTGCAACTCCACTTGTTTGTGAGAGATGTTGGTGTGAAATAGAAAATACAAATATAGAAAGCAGCAAAGGTATTATATCATCGGGTTCTCCAAGCCCTGCAGATGGAATAAACTTGAAAAGTGTACTCTCTGGGCCAGCATCAACAGGTTGTAATAGAGGCATCGAAGTTACAAAAGTGAAAAAGCATACCAGATTGAAAGAGCAGCTTGAGTTTTCACAGAGTTCAAAGAGTAGCCAAGGTGACTACAGTAGTAGTACAAGTACCAGCGATGAGAGTAATATCAGTGGTTCTAGTTGTGGCAATAGGCCTCACATGTCGAAGGATTTTAGATGGCAAGCCATACGAGATGCTCAAATGCAGCATGGCGTCTTGGGCTTGAGACACTTCAATCTTTTGAAGAAACTTGGTTGTGGAGACATTGGTACTGTATATCTTTCTGAACTAATTGGCCAAAATTGTTTGTTTGCTATTAAAGTAATGGACAATGAATTTTTGGCAAGAAGGAAGAAGATGCCGAGGGCTCAAACTGAAAGGGAAATATTACGAATGCTGGATCATCCTTTTCTTCCAACATTGTATGCACAGTTTACATCAGAAAATCTATCATGTCTGGTCATGGAGTATTGTCCTGGAGGAGATCTTCATGTTCTACGTCAGAAACAGCTTGGCAGATGTTTTTCAGAGCCAGCAGCAAGGTTTTACGTAGCTGAAGTCCTTCTTGCTTTGGAGTACTTGCACATGCTTGGAGTTGTTTACCGTGATTTGAAACCAGAAAACATTCTTGTTCGAGAAGACGGTCACATTATGCTCACAGATTTTGACCTTTCACTCAGGTGTGACGTTAGCCCAACACTTCTGAAATCATCTTCTGATATGGATCCTGCCAAGGTTTCTGGTACATGCACAAAGTCAAGCTGCATTGAGCCATTCTGCATTGAACCATCTTGTCAAGTTGCATGCTTCAGTCCTAGATTCTTACCACCTGCGGCAAAAGCAAGGAAACTAAAAGCTGATCTTGCTGCTCACATCAGATCATTGCCGCAGCTTGTGGCAGAGCCCACAGATGCAAGATCAAATTCCTTTGTTGGTACTCATGAATACCTAGCACCTGAGATAATCAAAGGAGAGGGACATGGTGCTGCAGTTGATTGGTGGACATTTGGTGTTTTTCTTTATGAACTTTTATATGGTAGAACACCCTTCAAAGGTTCTAACAATGAAGAAACATTAGCCAACGTCGTCTTGCAAAATCTCAGATTCCCTGATAGCCCTTTTGTTAGTTTCCAAGCAAGGGATCTTATTAAAGGGTTGTTAGTTAAAGAGCCTGAAAACCGTTTAGGTACAGAGAAAGGTGCTGCAGAGATTAAACAACATCCCTTCTTCGAGGGCCTTAATTGGGCATTAATACGTTGTGCTATCCCACCGGAACTTCCTGACCTTTGTGAATTTGAATTGGGACTTTCAGACATGATTGCTCAGTCACAAAGCAAGGATGGCAAATTTTTAGAGTGTACAACAACTGGAGAACAAGTGGAATTTGAGTTGTTCTAG 2607 0.4139 MGSFSGICEIVEAREDLNTGIYQSSSGYSVSEKNQKLPAVKLGYKDNLDNDINKLFESITLKSSSRDLSFLPDGTSPKMKNALKKPMTMGVPRSPRVGISEPVTLKQALRDLCISKASEMAAMKRLSKSAASPRISEAGKIQTLYNSVVTDARRSGPSNVESKGSSTEISLVLEEDKSLVLNKESPSHETSKSTPLSQKAHSSKIAVATTQNDTGASLMQSDLECSSSKVGISGVSAQPSEPTQIENQMSASSSSCCNTDGSKVELPEKDSSPKKLGNKASMSKNVRKGMLQTISSSSGNGNKVCKLSRNSPRTVKSVIKTKSLGKKKLKQGSDSALHVPPPNEGNNNPVPAATPLVCERCWCEIENTNIESSKGIISSGSPSPADGINLKSVLSGPASTGCNRGIEVTKVKKHTRLKEQLEFSQSSKSSQGDYSSSTSTSDESNISGSSCGNRPHMSKDFRWQAIRDAQMQHGVLGLRHFNLLKKLGCGDIGTVYLSELIGQNCLFAIKVMDNEFLARRKKMPRAQTEREILRMLDHPFLPTLYAQFTSENLSCLVMEYCPGGDLHVLRQKQLGRCFSEPAARFYVAEVLLALEYLHMLGVVYRDLKPENILVREDGHIMLTDFDLSLRCDVSPTLLKSSSDMDPAKVSGTCTKSSCIEPFCIEPSCQVACFSPRFLPPAAKARKLKADLAAHIRSLPQLVAEPTDARSNSFVGTHEYLAPEIIKGEGHGAAVDWWTFGVFLYELLYGRTPFKGSNNEETLANVVLQNLRFPDSPFVSFQARDLIKGLLVKEPENRLGTEKGAAEIKQHPFFEGLNWALIRCAIPPELPDLCEFELGLSDMIAQSQSKDGKFLECTTTGEQVEFELF 868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02427 868 MobiDBLite consensus disorder prediction 323 348 - -
Trre1g02427 868 FunFam serine/threonine-protein kinase D6PK-like 708 831 - -
Trre1g02427 868 Gene3D Phosphorylase Kinase; domain 1 479 560 - -
Trre1g02427 868 MobiDBLite consensus disorder prediction 230 261 - -
Trre1g02427 868 MobiDBLite consensus disorder prediction 419 455 - -
Trre1g02427 868 Gene3D Transferase(Phosphotransferase) domain 1 561 629 - -
Trre1g02427 868 CDD STKc_phototropin_like 479 832 - -
Trre1g02427 868 Gene3D Transferase(Phosphotransferase) domain 1 706 828 - -
Trre1g02427 868 MobiDBLite consensus disorder prediction 179 205 - -
Trre1g02427 868 MobiDBLite consensus disorder prediction 422 454 - -
Trre1g02427 868 Pfam Protein kinase domain 482 633 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g02427 868 Pfam Protein kinase domain 710 813 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g02427 868 FunFam Serine/threonine-protein kinase D6PK-like 479 564 - -
Trre1g02427 868 FunFam serine/threonine-protein kinase D6PK-like 565 632 - -
Trre1g02427 868 SUPERFAMILY Protein kinase-like (PK-like) 457 829 IPR011009 -
Trre1g02427 868 ProSiteProfiles Protein kinase domain profile. 481 813 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g02427 868 SMART serkin_6 481 813 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g02427 868 PANTHER FLIPPASE KINASE 1-RELATED 208 834 - -
Trre1g02427 868 MobiDBLite consensus disorder prediction 184 205 - -
Trre1g02427 868 MobiDBLite consensus disorder prediction 230 285 - -
Trre1g02427 868 ProSitePatterns Serine/Threonine protein kinases active-site signature. 602 614 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02427 Trre-Chr1 19585680 19590457 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02427 1 868 AGC Kinase Gene Family AT3G52890 53.187 0.0 855
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Trre1g02427 Pkinase 2.5e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02427 - K08286 gmx:100813470 1302.73