Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02417 ATGCAGGGTTTCCCATCATTCATTGCCTCAGTAGTTAAACAAACCACTACCGATTTGATTCATCTCCAAAGCATCGGATTTAAGAGAATTGTTGTAGGTGGATTACAACCCCTTGGTTGTCTTCCTCAAGCCACTGTTCAAACATCATTCCAAAGTTGCAATAGTACATTTAATGACTTAGTAACTCTCCACAACAATCTATTGAACCAATCTGTGACAAAGTTGAACCAAGAAAGCAATGATCACAACACATTCACAATTCTAGACCTTTTCGATGGTTTTAGGACAGTGTTGAATAACCCTTCAAGCCATAATATCAAGGAACGTTTGAAGCCATGTTGCTCTGGAGTAAGCAGTGAGTATAATTGTGGAAGTGTTGATGAGAATAATGTTAAAAAATATTTGGTTTGTAAAAATCCTGAATCAACTTTCTTTTGGGATCGGTTGCATCCAACACAAGCAGGTTGGAATGCTGTGTATAGTGAATTGAAGATTAAAGGTCTTCATCAAATTATGTACTAG 522 0.3697 MQGFPSFIASVVKQTTTDLIHLQSIGFKRIVVGGLQPLGCLPQATVQTSFQSCNSTFNDLVTLHNNLLNQSVTKLNQESNDHNTFTILDLFDGFRTVLNNPSSHNIKERLKPCCSGVSSEYNCGSVDENNVKKYLVCKNPESTFFWDRLHPTQAGWNAVYSELKIKGLHQIMY 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02417 173 Gene3D SGNH hydrolase 2 165 IPR036514 -
Trre1g02417 173 PANTHER OSJNBB0059K02.9 PROTEIN 2 171 - -
Trre1g02417 173 Pfam GDSL-like Lipase/Acylhydrolase 18 161 IPR001087 GO:0016788
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02417 Trre-Chr1 19456356 19456877 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02417 1 159 Pollen Coat Proteome AT1G75930 22.840 5.56e-11 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02417 - - pvu:PHAVU_007G2286001 253.832
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04449 13 52087250 52091804 Trre1g02417 1 19456356 19456877 PCT