Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02412 ATGGCGGAAGAACAACCATGTCAAGCTCCTGAAGGTCACCGTCTCTGCGCAAACAACTGTGGTTTCCTCGGTAGTCCAGCAACCATGAATCTCTGCTCAAAATGCTACGGTGATATTCGTATAAAGGAACAACAAGATGCTTCAACAAAATCCACAATCGAAAACGCTCTTTCTTCGTCGTCATCTTCTTCCTCCGCCGTCGCATCGGTCGCTTCTCCGTCGATTTCAATATCAGAGCCGATCGTTGTTTCCGTCGAACCAATCAACCCGACGCCAGCTTTGACAGAGATCGCTTCAAGTTCTATAACCGTCGATTCGGTTGGTTCGGTTGAACCGAACCGGTGCGTGACGTGTAGAAAGCGCGTGGGGTTGACCGGGTTTAAGTGTAGATGTGGGTCTATGTTTTGTGGGTCCCACAGGTATCCGGAGAGACACGGCTGTAGCTTTGATTTTAAGACGGTGGGGAGAGAGGAAATAGCTCGAGCGAATCCTTTGATTAGAGCGGAGAAGCTTCAGAGGATTTGA 525 0.4933 MAEEQPCQAPEGHRLCANNCGFLGSPATMNLCSKCYGDIRIKEQQDASTKSTIENALSSSSSSSSAVASVASPSISISEPIVVSVEPINPTPALTEIASSSITVDSVGSVEPNRCVTCRKRVGLTGFKCRCGSMFCGSHRYPERHGCSFDFKTVGREEIARANPLIRAEKLQRI 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02412 174 Gene3D - 1 73 - -
Trre1g02412 174 ProSiteProfiles Zinc finger AN1-type profile. 109 155 IPR000058 GO:0008270
Trre1g02412 174 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 15 60 - -
Trre1g02412 174 Pfam A20-like zinc finger 14 36 IPR002653 GO:0003677|GO:0008270
Trre1g02412 174 SMART AN1_Zf_4 115 152 IPR000058 GO:0008270
Trre1g02412 174 Gene3D - 95 170 IPR035896 -
Trre1g02412 174 SUPERFAMILY AN1-like Zinc finger 110 169 IPR035896 -
Trre1g02412 174 Pfam AN1-like Zinc finger 117 151 IPR000058 GO:0008270
Trre1g02412 174 FunFam Zinc finger AN1-type containing 6 93 170 - -
Trre1g02412 174 SMART A20_3 13 37 IPR002653 GO:0003677|GO:0008270
Trre1g02412 174 ProSiteProfiles Zinc finger A20-type profile. 10 44 IPR002653 GO:0003677|GO:0008270
Trre1g02412 174 PANTHER AN1-TYPE ZINC FINGER PROTEIN 13 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02412 Trre-Chr1 19373801 19374325 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02412 1 174 C2H2 Transcription Factor Family AT3G52800 56.000 6.59e-56 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02412 - - gmx:100788323 220.705
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04453 13 52125798 52126295 Trre1g02412 1 19373801 19374325 PCT