Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02381 ATGCCAATCTCATATTCATATTCACTCTCCATTTCTTCTTCATCATCCTTTCTACCAAAGCTAAACCCAAACCTCCGTCCAATCCAATTCCGAACCAGACAACATAACCGCCAATTCCCGAACCTAAAAATCCAAAACTCCTCCACCCGAACCAACACCATACAGTTTCTAAAACCGTATCTAATTTCCCACCAAAAACCAATCCTCTTCGGTTGGCTCTGTAGTGCTATCTCCGTTTACTCTCTCTCTAACATTCTCTCCAAATTCTCCGCCATCACCACCGCCACAACAACCGTCCACGTCACACAGGGATTCTCTCTCGGCGGTTTGGTTCTTGTTCGATTGATTGCCACGTATGCACAGCATGCGCTTCTTTGGGAAGCTTCTCTCAACGCGGTTTACGACGTTCGCGTTCACGTTTTCGATCGTGTTCTCAATAGAGAACTTGCGTTTTTTGAAGCTAACGACGCCGTTTCAGCCGGGGATATTGCTTATCGAATTAATGCTGAAGCTTCTGATCTTGCTGTTACCTTATACGCTCTTCTTAATACCATAGTACCTAGTACTCTGCAATTGTCTGCAATGATAATGCATATGTTGGTTATAAGTCCTTCCCTTTCTTTGGTTTCAGCCATGGTTATTCCTTGTATGGTTCTAGTTGTTGCCTTTCTTGGTCAAGAACTTCGCAAGATATCTAAAAAGTCACATACTAGTGTTGCTGCTCTCTCTGCATATCTAAACGAGATCTTGCCCGCAATTCTCTTCGTGAAAGCGAACAACGCAGAGTTGCTTGAGAGTGTCAGGTTTAAGAGACTGGCCCTGATAGACAATTCTGCAAAGTTGAACAAAAAAAGGATGAAAGCAGTCATTCCCCAGGTTATACAGGCTATTTACTTTGGAGTCCTTTCCATACTTTGCGCAGGTTCGGTGGTGATTTCAAGAGGTTCATTTGATCGCTGTAGCTTGGTTTCATTCGTGACTTCATTGCTTTTCTTGATTGAGCCTATTCAGGATGTAGGGAAAGCTTACAATGAATGGAGGCAGGGAGAACCAGCTATTGAACGCTTGTTTGCTATGACCCAGTTCAAAAATAAGGTTGTTGAAAAACCAGATGCTGTTGATTTGGACCATGTTACAGGGGAGTTGAAATTATGTAGTGTCTCCTTTAAGTATAATGACGGTCTGCCTCTTATCTTAAATGAATTGAATCTCCATGTTCGGCCTGGAGAGATAGTTGCTATTGTCGGTCCTTCTGGGGGAGGGAAAACAACACTTGCAAAACTGTTGCTTCGCCTTTATGATCCTATATCTGGGGCTATACTGATTGATAACCAAAACACCCAAAACATTAGTTTGCAGAGTTTAAGAAGACATGTTGGTGTAGTTTCTCAAGATATAACACTTTTTTCAGGTACGGTTGCTGAAAACATTGGTTATAGGGATCTGACAACAAAAATTGACATGGAGAGAGTGAAGCAGGTAGCTCAAACTGCTTATGCTGACGAGTTTATCAGAAAACTTCCAGAAGGTTACAAAACCAATATTGGACCAAGGGGATCAACTTTAAGTGGAGGCCAGAGGCAAAGGCTGGCTATTGCAAGGGCTTTCTATCAAAATTCTTCTATATTAATTCTGGATGAGGCAACTTCTGCCTTAGATAGTAAATCCGAGTTATTAGTGCGACAAGCTGTAGAGCGTTTAATGGAAAATCGTACGGTGCTTGTAATCTCACATCGCTTGGAAACCGTTATGATGGCTAAACGAATATTCCTTTTAGATAATGGAAAGCTAGAAGAGCTGCCTCGATCAACTATGTTGGACGGTCATATGGATTCATTGCTTTCATCTGGGCGTATCGTTTGA 1863 0.4214 MPISYSYSLSISSSSSFLPKLNPNLRPIQFRTRQHNRQFPNLKIQNSSTRTNTIQFLKPYLISHQKPILFGWLCSAISVYSLSNILSKFSAITTATTTVHVTQGFSLGGLVLVRLIATYAQHALLWEASLNAVYDVRVHVFDRVLNRELAFFEANDAVSAGDIAYRINAEASDLAVTLYALLNTIVPSTLQLSAMIMHMLVISPSLSLVSAMVIPCMVLVVAFLGQELRKISKKSHTSVAALSAYLNEILPAILFVKANNAELLESVRFKRLALIDNSAKLNKKRMKAVIPQVIQAIYFGVLSILCAGSVVISRGSFDRCSLVSFVTSLLFLIEPIQDVGKAYNEWRQGEPAIERLFAMTQFKNKVVEKPDAVDLDHVTGELKLCSVSFKYNDGLPLILNELNLHVRPGEIVAIVGPSGGGKTTLAKLLLRLYDPISGAILIDNQNTQNISLQSLRRHVGVVSQDITLFSGTVAENIGYRDLTTKIDMERVKQVAQTAYADEFIRKLPEGYKTNIGPRGSTLSGGQRQRLAIARAFYQNSSILILDEATSALDSKSELLVRQAVERLMENRTVLVISHRLETVMMAKRIFLLDNGKLEELPRSTMLDGHMDSLLSSGRIV 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02381 620 Gene3D - 371 617 IPR027417 -
Trre1g02381 620 Pfam ABC transporter transmembrane region 75 335 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre1g02381 620 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 86 599 IPR039421 -
Trre1g02381 620 SUPERFAMILY ABC transporter transmembrane region 57 361 IPR036640 GO:0005524|GO:0016020
Trre1g02381 620 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 73 348 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre1g02381 620 FunFam ABC transporter ATP-binding protein 375 616 - -
Trre1g02381 620 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 382 619 IPR003439 GO:0005524
Trre1g02381 620 CDD ABC_6TM_exporters 104 356 - -
Trre1g02381 620 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 371 600 IPR027417 -
Trre1g02381 620 ProSitePatterns ABC transporters family signature. 522 536 IPR017871 GO:0005524|GO:0016887
Trre1g02381 620 SMART AAA_5 408 596 IPR003593 GO:0016887
Trre1g02381 620 Pfam ABC transporter 399 550 IPR003439 GO:0005524
Trre1g02381 620 Gene3D ABC transporter type 1, transmembrane domain 52 361 IPR036640 GO:0005524|GO:0016020
Trre1g02381 620 FunFam ABC transporter related 55 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02381 Trre-Chr1 19169985 19174308 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02381 136 618 Calmodulin-binding Proteins AT2G36910 31.590 4.96e-55 200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02381 K02021 - gmx:100788075 863.603