Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02364 ATGAGATGCAACGATGAAGAAGAAGCTAAAGAGAGTGATGTTGATGACTATGCTGAGATTACGAATGAGGAGGCAAATAGAAACATAGGAGGCAGCATGGATAAGAAATGCACAAAAACTATAGATGTGAATAAGAGAAGCTGCACTGATTCTCATCCCGATGAGAATCCCAATTTCACTCTCAAATTATCGCGATCTTATGTGGAAGGTCAGAATTTAAGATTGAGGATACCTTGTTCGTTTTCGAAAGAATACATGAATGAGTTGTTGCAAGGGAATGCAACGATTAGAAGTGTTGGTGACGACAGGACATGGAATGTGACTTTAAAATTGGATGAATGCAATAGAAATTTTGCAATGAGAACCGGTTGGAAGTCATTTTCACAGGAACATAACTTGCAAGTTGGTGATGTATGTAAATTTGAGATGACTCAAAGAGAACCACTTTCATTCACAATTACTATTATCCCAGCTACAAAGGAACCATGCCCGGTGCAGTTTCAAGAAAAACAACCAGTCCAAGAAGATATGGATTTTGTGGACAATTATGGAGAAGAAATTTCAAGGGGCTGCCCGAAAACACATGGTCTTACGAATTCTCCAAGTCCGAATCCACATTTTAAATTTGAAGTTTCTGTAACATCATTAGACAAGGTGGCCATACCAAGCGAGTTCTTGAAGAGACACAATATATTTAATGGAAATTCGGTTGAGTTGAAAGTAGGCGAAGGAACATGGTTTGTAGAGGTGAATTATAATCAACATCTTGATTATGGGTGTTTCACTAAAGGTTGGGAAGAATTTGTGAGAGAATGCAAGGTAAAGATTGGAGACACTTGTTTGTTTGAGATGATTGATGTACAAAATCATGTGTTCAAGGTTTCAATTATCCTAGATGTTTAG 903 0.3765 MRCNDEEEAKESDVDDYAEITNEEANRNIGGSMDKKCTKTIDVNKRSCTDSHPDENPNFTLKLSRSYVEGQNLRLRIPCSFSKEYMNELLQGNATIRSVGDDRTWNVTLKLDECNRNFAMRTGWKSFSQEHNLQVGDVCKFEMTQREPLSFTITIIPATKEPCPVQFQEKQPVQEDMDFVDNYGEEISRGCPKTHGLTNSPSPNPHFKFEVSVTSLDKVAIPSEFLKRHNIFNGNSVELKVGEGTWFVEVNYNQHLDYGCFTKGWEEFVRECKVKIGDTCLFEMIDVQNHVFKVSIILDV 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02364 300 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 48 163 IPR044837 -
Trre1g02364 300 ProSiteProfiles B3 DNA-binding domain profile. 60 159 IPR003340 GO:0003677
Trre1g02364 300 SUPERFAMILY DNA-binding pseudobarrel domain 54 156 IPR015300 -
Trre1g02364 300 SUPERFAMILY DNA-binding pseudobarrel domain 202 294 IPR015300 -
Trre1g02364 300 Gene3D - 194 299 IPR015300 -
Trre1g02364 300 Gene3D - 39 160 IPR015300 -
Trre1g02364 300 ProSiteProfiles B3 DNA-binding domain profile. 204 300 IPR003340 GO:0003677
Trre1g02364 300 Pfam B3 DNA binding domain 211 295 IPR003340 GO:0003677
Trre1g02364 300 Pfam B3 DNA binding domain 61 157 IPR003340 GO:0003677
Trre1g02364 300 SMART B3_2 209 295 IPR003340 GO:0003677
Trre1g02364 300 SMART B3_2 59 159 IPR003340 GO:0003677
Trre1g02364 300 CDD B3_DNA 212 297 IPR003340 GO:0003677
Trre1g02364 300 CDD B3_DNA 57 157 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02364 Trre-Chr1 19053242 19055140 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02364 75 285 REM Transcription Factor Family AT4G31690 26.667 2.33e-10 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre1g02364 B3 3e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02364 - - tpra:123903252 508.449