Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02363 ATGTCATTTGAACACTATGGGCGTGGCAGTGAAGCCAAGGGCATACACTTCTACCAGACTATTCAACTTCGCCAGTTACAAGACCAAGAACTAATGATTCCGAGGGATTTTGTTGAGAGATATTGGAAAGATGTATCAAATCCAATATCCCTTAGACTTCCAAATGAGTCTGTGTGCAAAATGTATTGGGTACAATGGGGTGATGATATTTGGCTTCAGGATTGGAAAAAGTTTGCGCGGTCGCTTAGATGCGGAGATCTTTTAGTTTTTCAATACAAAGGAGGGTCAGATTTTCATGTTATTATATTAGATGAGAGTAAATTAGAAATTGACTATTCAAGTATGAGGTACAATGATGATCAAGAGGAAGAAGAGCGTGAAAATATCGAACAACTCCTCAAGAGAAAGAAAATCAACTCAAATGATAGTGTTGTTACACCTCAAGAGACTAACATTGACAAGAGACAAATTAATATGAATGCAACTCAGAGAAAAGTCTCAGGCAAGTTCATCTCTTTCCTTTGA 525 0.3752 MSFEHYGRGSEAKGIHFYQTIQLRQLQDQELMIPRDFVERYWKDVSNPISLRLPNESVCKMYWVQWGDDIWLQDWKKFARSLRCGDLLVFQYKGGSDFHVIILDESKLEIDYSSMRYNDDQEEEERENIEQLLKRKKINSNDSVVTPQETNIDKRQINMNATQRKVSGKFISFL 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02363 174 Gene3D - 10 107 IPR015300 -
Trre1g02363 174 Coils Coil 119 139 - -
Trre1g02363 174 CDD B3_DNA 31 104 IPR003340 GO:0003677
Trre1g02363 174 PANTHER B3 DOMAIN-CONTAINING 9 148 - -
Trre1g02363 174 SMART B3_2 17 106 IPR003340 GO:0003677
Trre1g02363 174 SUPERFAMILY DNA-binding pseudobarrel domain 15 105 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02363 Trre-Chr1 19052461 19053145 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02363 17 119 B3 DNA Binding Superfamily AT3G18990 33.019 5.08e-12 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02363 - - tpra:123903252 308.531