Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02361 ATGACATCTGATGATGGACCGACTTACGTGAATGCTAAGCAGTACCATGGAATCATCAGGCGCAGGCAATCCCGTGCCAAAGTTGTGCTTCAGAATAAACTGATAAAGCGTAACAAGCCATATATGCACGAATCGCGCGTCATCTACATGCATCGTAACTCTGCTAAGAAGTTTGTTGATACTTTAATAACCATGCATTATCATAACTTTGCTGCTGTCAAAAGGGAAGCAAATATAATAACAGACATAACACACCTTCCATATTCACTCACCTATACCAACAATCCATCTTTTATCACAATTATAGTTATTGGAAGCTAA 321 0.3894 MTSDDGPTYVNAKQYHGIIRRRQSRAKVVLQNKLIKRNKPYMHESRVIYMHRNSAKKFVDTLITMHYHNFAAVKREANIITDITHLPYSLTYTNNPSFITIIVIGS 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02361 106 Gene3D - 4 61 - -
Trre1g02361 106 PRINTS CCAAT-binding transcription factor subunit B signature 7 29 IPR001289 GO:0003700|GO:0006355
Trre1g02361 106 PRINTS CCAAT-binding transcription factor subunit B signature 38 61 IPR001289 GO:0003700|GO:0006355
Trre1g02361 106 SMART cbf3 3 61 IPR001289 GO:0003700|GO:0006355
Trre1g02361 106 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 3 46 IPR001289 GO:0003700|GO:0006355
Trre1g02361 106 ProSiteProfiles NF-YA/HAP2 family profile. 4 64 IPR001289 GO:0003700|GO:0006355
Trre1g02361 106 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 7 47 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02361 Trre-Chr1 19041089 19041524 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02361 7 79 CCAAT-HAP2 Transcription Factor Family AT1G30500 44.737 2.35e-17 71.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Trre1g02361 CBFB_NFYA 2.2e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02361 K08064 - gmx:100808195 89.7373