Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02360 ATGTCAAATTATTGCAGTCCTCCAAAATTCTTCAAGATTATCCAAAATCATGAACTAGAAAATGGAGAGCTTAGGGTACCAAAGAAGTTTGTGGAGAAATATTGGAATGGAATACCAAATCCAGTAGCAATTACACTTCCTAATGGTGTTCAACAAGAATTAGTTTGGGTTAAGCGTGACGGAGATATCTGGTTTAGAAAGAATTGGGAGAAAATTGCTAAGTATTTGAAATTTGGATTTGTTGTGTATTTCAAATACATGGGAGGATCATGTTTTCAGCTTGAGATATTTGGACTCGATTGTTTGGAAATTGACTATTCCAACATTAAGTTTAAAAGAAAAGCTCAAGAATTTATTCAAATGAGTGATGAAAGTGATGATGATAGTGATGCTGGTGAGAGTCAAATACATAAACAATTTCAAAGGACACAAAATGGCAAGAGAAAATTCTCATGTATGAATAAGAAGGCCAAAAAGTACATGAAAGCTGAAACTAATGTTGCTAGTACATCAAAAAGAAGAAAAAGTGGTGTGACTAATAACAACTATCCAAGTTTTGAACTTAAATTGAGACGAACTTATGCACAAGGCTATTTATTTAGAATTCCAATTGCGTTTTCAAGAACATACATGAAAGGGTTTGATGGGATTGCAAGTGTAAGGGTTATTGGTAAGAATAGGATTTGGAAGCTGAGTGTAAAATATGATTGTGTAACAAAACATTCTGTTGTGAATGGTGGTTGGCATCCATTTACCAAGGAAAATAACTTACAAATTGGTGATGTTTGCAAGTTTGAGATGATTCGAGAAGATCCACTTACATTCGTTGTTACTATTATCCGCACAAGAGAGGAACCAAGGCACAGCCACTTGCGAGGTTATAAAAAAGTGAAGTCGGAAGGTCCAGGTTCCCGGTAG 918 0.3508 MSNYCSPPKFFKIIQNHELENGELRVPKKFVEKYWNGIPNPVAITLPNGVQQELVWVKRDGDIWFRKNWEKIAKYLKFGFVVYFKYMGGSCFQLEIFGLDCLEIDYSNIKFKRKAQEFIQMSDESDDDSDAGESQIHKQFQRTQNGKRKFSCMNKKAKKYMKAETNVASTSKRRKSGVTNNNYPSFELKLRRTYAQGYLFRIPIAFSRTYMKGFDGIASVRVIGKNRIWKLSVKYDCVTKHSVVNGGWHPFTKENNLQIGDVCKFEMIREDPLTFVVTIIRTREEPRHSHLRGYKKVKSEGPGSR 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02360 305 SMART B3_2 186 283 IPR003340 GO:0003677
Trre1g02360 305 SMART B3_2 10 100 IPR003340 GO:0003677
Trre1g02360 305 SUPERFAMILY DNA-binding pseudobarrel domain 7 100 IPR015300 -
Trre1g02360 305 MobiDBLite consensus disorder prediction 122 147 - -
Trre1g02360 305 PANTHER B3 DOMAIN-CONTAINING 6 270 - -
Trre1g02360 305 SUPERFAMILY DNA-binding pseudobarrel domain 180 281 IPR015300 -
Trre1g02360 305 Gene3D - 4 101 IPR015300 -
Trre1g02360 305 CDD B3_DNA 184 281 IPR003340 GO:0003677
Trre1g02360 305 CDD B3_DNA 8 97 IPR003340 GO:0003677
Trre1g02360 305 Pfam B3 DNA binding domain 200 282 IPR003340 GO:0003677
Trre1g02360 305 Gene3D - 156 285 IPR015300 -
Trre1g02360 305 ProSiteProfiles B3 DNA-binding domain profile. 185 283 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02360 Trre-Chr1 19029679 19031406 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02360 8 284 B3 DNA Binding Superfamily AT3G18990 24.412 1.16e-21 92.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre1g02360 B3 4e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02360 - - tpra:123898681 301.212